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Author SHA1 Message Date
Dan Funk
23d4bf4457
Merge pull request #45 from sartography/dependabot/pip/jinja2-2.11.3 
Bump jinja2 from 2.11.2 to 2.11.3
 2021-04-02 12:36:41 -04:00
Dan
c9ddfe6be4 Fixing an error in the API.yml file that started showing up with the pip update. 2021-04-02 12:32:23 -04:00
Dan Funk
cc1b602e34
Merge pull request #43 from sartography/user-lookup-fix 
Two bug fixes:
 2021-04-02 12:20:11 -04:00
mike cullerton
15dc53f957 Removed Q_COMPLETE from the StudySchema fields, because it is no longer a column. It is a relationship now. 2021-04-02 11:48:09 -04:00
mike cullerton
f23e4e307f removed commented line 2021-04-01 14:12:23 -04:00
mike cullerton
74b6dde9b2 Added component schema for IRBStatus 
Modified Q_COMPLETE property definition for study schema
 2021-04-01 14:11:59 -04:00
mike cullerton
c9695cc867 Migration for current DB changes 2021-04-01 12:47:27 -04:00
mike cullerton
b663a4ec38 Added new API endpoint to check IRB Status for study 2021-04-01 12:46:15 -04:00
mike cullerton
8d0382ab5a The Q_COMPLETE form field on the new/edit study page is changing from boolean to option select. 
Also adding API endpoint to check the IRB status

Added check_study method for API endpoint
Added 'No Error' as default for new Q_COMPLETE select form field
Added code to seed the current status to the form
Added code to process the status information from the form and enter into irb_status table
 2021-04-01 12:45:41 -04:00
mike cullerton
762c29f951 The Q_COMPLETE form field on the new/edit study page is changing from boolean to option select. 
Import new IRBStatus model
Change Q_COMPLETE form field to SelectField
 2021-04-01 12:40:59 -04:00
mike cullerton
d9f46de161 The Q_COMPLETE form field on the new/edit study page is changing from boolean to option select. 
Model Changes:
Delete Q_COMPLETE column from study table.
Add Q_COMPLETE to study table as relationship to new IRBStatus table
Add IRBStatus table.
Add IRBStatusSchema for API JSON
 2021-04-01 12:39:09 -04:00
mike cullerton
f4bd576a72 Sample csv file for testing the file upload feature 
Attempt at testing the file upload feature.
Test fails because SQLite doesn't accept the date as a string. NEED TO FIND A SOLUTION FOR THIS
 2021-03-30 11:00:40 -04:00
mike cullerton
a2ddfaf03b Migration script for new db columns 2021-03-30 10:56:49 -04:00
mike cullerton
c260e6a465 Added new fields for study_details 
Changed some field types

Removed 2 unused documents from required documents list
Changed the name of required documents from Required to Documents
 2021-03-30 10:56:23 -04:00
mike cullerton
a1f2b98ecf Added code to process uploaded study_details csv file 
Modified study_details method to accommodate the csv upload
Added imports for csv, TextIOWrapper
Removed unused imports for date, re
 2021-03-30 10:53:56 -04:00
mike cullerton
4834c029d9 Added form to upload study_details csv file 2021-03-30 10:48:36 -04:00
mike cullerton
5371d204e5 Added db.drop_all() to the tearDownClass class. 
Now we always start tests with a new DB

I tried to add some tests for form validation, but ran into a problem with the csrf_token.
The tests couldn't find it.
This is not a problem using the form for real.
It would be nice to figure this out.
 2021-03-25 13:14:17 -04:00
mike cullerton
ab776ea47d Migration for study_details db changes 2021-03-25 13:12:03 -04:00
mike cullerton
9d839bb85c Changed to match real Protocol Builder 
- Removed `Scientific Contact` from Investigator types
- Changed study_details SPONSORS_PROTOCOL_REVISION_DATE data type from integer to date
- Added 8 new fields to study_details
 2021-03-25 13:11:27 -04:00
mike cullerton
eb4ca6fda4 Sorted the fields in the study_details form to match real Protocol Builder 2021-03-25 13:07:42 -04:00
mike cullerton
0ea0b0a233 added form validation for study_details 2021-03-25 13:06:52 -04:00
dependabot[bot]
5c4a8037d4
Bump jinja2 from 2.11.2 to 2.11.3 
Bumps [jinja2](https://github.com/pallets/jinja) from 2.11.2 to 2.11.3.
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/master/CHANGES.rst)
- [Commits](https://github.com/pallets/jinja/compare/2.11.2...2.11.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-03-20 02:41:59 +00:00
dependabot[bot]
5fc5a73957
Bump urllib3 from 1.26.2 to 1.26.3 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.2 to 1.26.3.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/1.26.2...1.26.3)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-03-19 20:04:15 +00:00
mike cullerton
b6de1b9146 Two bug fixes: 
- changed onclick to onchange for the select tag
 - added BASE_HREF to the redirect url
 2021-02-23 17:52:10 -05:00
Dan Funk
8a009522c2
Merge pull request #41 from sartography/user-lookup-fix 
fix for user lookup stuff.
 2021-02-23 14:41:33 -05:00
mike cullerton
467e6200be fix for user lookup stuff. 
{{ base_href }} needed quotes around it.
Fixed my test for LDAP search so it doesn't have localhost hardcoded :(
 2021-02-23 14:01:19 -05:00
Dan Funk
d8074ad21c
Merge pull request #39 from sartography/pb-current-user-studies-only-173 
Pb current user studies only 173
 2021-02-23 11:02:34 -05:00
Dan Funk
e24c67f417
Merge branch 'dev' into pb-current-user-studies-only-173 2021-02-23 11:02:22 -05:00
mike cullerton
93b87f806f Ticket 209 
Alter Study table so that TITLE can be longer than 80 characters
 2021-02-22 12:36:10 -05:00
mike cullerton
9b8fd0af81 Test for some redirects we perform for the new code. 2021-02-19 10:55:44 -05:00
mike cullerton
81457c2b7c We can now limit the list of studies to a particular user. 
Created a new route /user_studies in __init__.py that takes a uva_id.
Pulled out some dupllcate code into a new method; render_study_template

In index.html, added a pulldown to select the user. I pull the list of users from the studies so we only show users that have studies.
Added a script to process the selection.
 2021-02-19 10:55:21 -05:00
mike cullerton
60bd0f22ef Fix for LDAP lookup issue where we had the wrong url on testing. 2021-02-19 10:50:13 -05:00
mike cullerton
85bb0bf37c Merge branch 'dev' of https://github.com/sartography/protocol-builder-mock into dev 2021-02-17 10:50:33 -05:00
mike cullerton
f0803990e9 fixed url for ldap lookup. Had hardcoded localhost 2021-02-17 10:49:58 -05:00
Dan
3364619267 Removing deploy step from Travis, as we are moving to Quay.io 
for this process.
Dropping the deloy.sh as it is no longer in use.
Updating the docker file to remove denendency on cr-connect-python-base
 2021-02-11 16:07:28 -05:00
Dan
ccdc878bf1 Merge branch 'pb-mock-ldap-search-101' into dev 2021-01-21 12:26:11 -05:00
Dan
6d5f25ee53 Allow overriding the ldap url using the environment. 2021-01-21 12:25:01 -05:00
Dan
a8a7061abc README updates 2021-01-20 11:03:14 -05:00
mike cullerton
4e95dd6578 Simple test of the Python part of searching LDAP for users 2021-01-06 11:17:41 -05:00
mike cullerton
6b88f6ff91 Added ldap3 2021-01-06 11:16:57 -05:00
mike cullerton
f235339aa1 Added route for search_ldap 2021-01-06 11:16:36 -05:00
mike cullerton
9c99ff29ed added LDAP_URL and LDAP_TIMEOUT_SEC 2021-01-06 11:16:12 -05:00
mike cullerton
2a5c575b32 Import jquery.min.js 
Added script for livesearch
 2021-01-06 11:15:46 -05:00
mike cullerton
1138d45183 The 3 files from cr-connect ldap. 
Most of my changes are in ldap_service. I added users_as_json method, commented out an unused method, and created my own search string.
	The model in ldap.py is unchanged.
	In ldap_response, I added a fake entry to test multiple returned values.
 2021-01-06 11:14:07 -05:00
Aaron Louie
e6c2f5a628
Merge pull request #33 from sartography/feature/limit_investigator_options 
Sponsor List Endpoint
 2020-08-25 11:00:33 -04:00
Dan Funk
b2b8e278db Adding a sponsors endpoint 2020-08-25 10:26:29 -04:00
Dan Funk
a706e0ecab
Merge branch 'testing' into feature/limit_investigator_options 2020-08-19 08:36:09 -04:00
Dan Funk
983422ae05 fixing a bug that would prevent the proper listing of personnel options types. 2020-08-19 08:25:03 -04:00
Dan Funk
134c4dbc42
Merge pull request #31 from sartography/dev 
dev to testing
 2020-08-17 16:40:15 -04:00
Dan Funk
b8b8dd00b0
Merge pull request #30 from sartography/feature/limit_investigator_options 
Feature/limit investigator options
 2020-08-17 16:34:34 -04:00