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https://github.com/sartography/protocol-builder-mock.git
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A sanity test.
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Dan Funk
parent
9e590961fa
commit
473c724fe3
125
migrations/versions/dde54f90dde2_.py
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125
migrations/versions/dde54f90dde2_.py
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"""empty message
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Revision ID: dde54f90dde2
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Revises: d3592c4e8a39
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Create Date: 2020-02-17 17:29:52.393203
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"""
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from alembic import op
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import sqlalchemy as sa
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# revision identifiers, used by Alembic.
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revision = 'dde54f90dde2'
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down_revision = 'd3592c4e8a39'
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branch_labels = None
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depends_on = None
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def upgrade():
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# ### commands auto generated by Alembic - please adjust! ###
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op.create_table('study',
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sa.Column('STUDYID', sa.Integer(), nullable=False),
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sa.Column('HSRNUMBER', sa.String(), nullable=True),
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sa.Column('TITLE', sa.String(length=80), nullable=False),
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sa.Column('NETBADGEID', sa.String(), nullable=False),
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sa.Column('Q_COMPLETE', sa.Boolean(), nullable=True),
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sa.Column('DATE_MODIFIED', sa.DateTime(timezone=True), nullable=True),
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sa.PrimaryKeyConstraint('STUDYID')
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)
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op.create_table('investigator',
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sa.Column('id', sa.Integer(), nullable=False),
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sa.Column('STUDYID', sa.Integer(), nullable=True),
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sa.Column('NETBADGEID', sa.String(), nullable=False),
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sa.Column('INVESTIGATORTYPE', sa.String(), nullable=False),
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sa.Column('INVESTIGATORTYPEFULL', sa.String(), nullable=False),
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sa.ForeignKeyConstraint(['STUDYID'], ['study.STUDYID'], ),
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sa.PrimaryKeyConstraint('id')
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)
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op.create_table('required_document',
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sa.Column('id', sa.Integer(), nullable=False),
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sa.Column('AUXDOCID', sa.String(), nullable=False),
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sa.Column('AUXDOC', sa.String(), nullable=False),
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sa.Column('STUDYID', sa.Integer(), nullable=True),
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sa.ForeignKeyConstraint(['STUDYID'], ['study.STUDYID'], ),
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sa.PrimaryKeyConstraint('id')
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)
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op.create_table('study_details',
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sa.Column('STUDYID', sa.Integer(), nullable=False),
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sa.Column('IS_IND', sa.Integer(), nullable=True),
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sa.Column('IND_1', sa.String(), nullable=True),
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sa.Column('IND_2', sa.String(), nullable=True),
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sa.Column('IND_3', sa.String(), nullable=True),
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sa.Column('IS_UVA_IND', sa.Integer(), nullable=True),
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sa.Column('IS_IDE', sa.Integer(), nullable=True),
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sa.Column('IS_UVA_IDE', sa.Integer(), nullable=True),
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sa.Column('IDE', sa.String(), nullable=True),
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sa.Column('IS_CHART_REVIEW', sa.Integer(), nullable=True),
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sa.Column('IS_RADIATION', sa.Integer(), nullable=True),
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sa.Column('GCRC_NUMBER', sa.String(), nullable=True),
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sa.Column('IS_GCRC', sa.Integer(), nullable=True),
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sa.Column('IS_PRC_DSMP', sa.Integer(), nullable=True),
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sa.Column('IS_PRC', sa.Integer(), nullable=True),
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sa.Column('PRC_NUMBER', sa.String(), nullable=True),
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sa.Column('IS_IBC', sa.Integer(), nullable=True),
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sa.Column('IBC_NUMBER', sa.String(), nullable=True),
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sa.Column('SPONSORS_PROTOCOL_REVISION_DATE', sa.Integer(), nullable=True),
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sa.Column('IS_SPONSOR_MONITORING', sa.Integer(), nullable=True),
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sa.Column('IS_AUX', sa.Integer(), nullable=True),
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sa.Column('IS_SPONSOR', sa.Integer(), nullable=True),
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sa.Column('IS_GRANT', sa.Integer(), nullable=True),
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sa.Column('IS_COMMITTEE_CONFLICT', sa.Integer(), nullable=True),
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sa.Column('DSMB', sa.Integer(), nullable=True),
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sa.Column('DSMB_FREQUENCY', sa.Integer(), nullable=True),
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sa.Column('IS_DB', sa.Integer(), nullable=True),
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sa.Column('IS_UVA_DB', sa.Integer(), nullable=True),
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sa.Column('IS_CENTRAL_REG_DB', sa.Integer(), nullable=True),
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sa.Column('IS_CONSENT_WAIVER', sa.Integer(), nullable=True),
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sa.Column('IS_HGT', sa.Integer(), nullable=True),
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sa.Column('IS_GENE_TRANSFER', sa.Integer(), nullable=True),
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sa.Column('IS_TISSUE_BANKING', sa.Integer(), nullable=True),
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sa.Column('IS_SURROGATE_CONSENT', sa.Integer(), nullable=True),
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sa.Column('IS_ADULT_PARTICIPANT', sa.Integer(), nullable=True),
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sa.Column('IS_MINOR_PARTICIPANT', sa.Integer(), nullable=True),
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sa.Column('IS_MINOR', sa.Integer(), nullable=True),
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sa.Column('IS_BIOMEDICAL', sa.Integer(), nullable=True),
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sa.Column('IS_QUALITATIVE', sa.Integer(), nullable=True),
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sa.Column('IS_PI_SCHOOL', sa.Integer(), nullable=True),
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sa.Column('IS_PRISONERS_POP', sa.Integer(), nullable=True),
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sa.Column('IS_PREGNANT_POP', sa.Integer(), nullable=True),
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sa.Column('IS_FETUS_POP', sa.Integer(), nullable=True),
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sa.Column('IS_MENTAL_IMPAIRMENT_POP', sa.Integer(), nullable=True),
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sa.Column('IS_ELDERLY_POP', sa.Integer(), nullable=True),
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sa.Column('IS_OTHER_VULNERABLE_POP', sa.Integer(), nullable=True),
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sa.Column('OTHER_VULNERABLE_DESC', sa.String(), nullable=True),
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sa.Column('IS_MULTI_SITE', sa.Integer(), nullable=True),
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sa.Column('IS_UVA_LOCATION', sa.Integer(), nullable=True),
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sa.Column('NON_UVA_LOCATION', sa.String(), nullable=True),
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sa.Column('MULTI_SITE_LOCATIONS', sa.String(), nullable=True),
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sa.Column('IS_OUTSIDE_CONTRACT', sa.Integer(), nullable=True),
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sa.Column('IS_UVA_PI_MULTI', sa.Integer(), nullable=True),
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sa.Column('IS_NOT_PRC_WAIVER', sa.Integer(), nullable=True),
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sa.Column('IS_CANCER_PATIENT', sa.Integer(), nullable=True),
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sa.Column('UPLOAD_COMPLETE', sa.Integer(), nullable=True),
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sa.Column('IS_FUNDING_SOURCE', sa.Integer(), nullable=True),
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sa.Column('IS_PI_INITIATED', sa.Integer(), nullable=True),
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sa.Column('IS_ENGAGED_RESEARCH', sa.Integer(), nullable=True),
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sa.Column('IS_APPROVED_DEVICE', sa.Integer(), nullable=True),
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sa.Column('IS_FINANCIAL_CONFLICT', sa.Integer(), nullable=True),
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sa.Column('IS_NOT_CONSENT_WAIVER', sa.Integer(), nullable=True),
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sa.Column('IS_FOR_CANCER_CENTER', sa.Integer(), nullable=True),
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sa.Column('IS_REVIEW_BY_CENTRAL_IRB', sa.Integer(), nullable=True),
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sa.Column('IRBREVIEWERADMIN', sa.String(), nullable=True),
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sa.ForeignKeyConstraint(['STUDYID'], ['study.STUDYID'], ),
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sa.PrimaryKeyConstraint('STUDYID')
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)
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# ### end Alembic commands ###
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def downgrade():
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# ### commands auto generated by Alembic - please adjust! ###
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op.drop_table('study_details')
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op.drop_table('required_document')
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op.drop_table('investigator')
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op.drop_table('study')
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# ### end Alembic commands ###
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@ -11,7 +11,7 @@ class Study(db.Model):
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DATE_MODIFIED = db.Column(db.DateTime(timezone=True), default=func.now())
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requirements = db.relationship("RequiredDocument", backref="study", lazy='dynamic')
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investigators = db.relationship("Investigator", backref="study", lazy='dynamic')
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study_details = db.relationship("StudyDetails", backref="study", lazy='dynamic')
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study_details = db.relationship("StudyDetails", uselist=False, backref="study")
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class StudySchema(ma.Schema):
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class Meta:
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@ -173,3 +173,5 @@ class StudyDetails(db.Model):
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class StudyDetailsSchema(ma.SQLAlchemyAutoSchema):
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class Meta:
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model = StudyDetails
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load_instance = True
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include_relationships = False
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41
test_sanity.py
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41
test_sanity.py
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@ -0,0 +1,41 @@
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import json
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import os
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import unittest
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from app import app, db
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from forms import StudyForm
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from models import Study
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class Sanity_Check_Test(unittest.TestCase):
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auths = {}
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@classmethod
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def setUpClass(cls):
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cls.ctx = app.test_request_context()
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cls.app = app.test_client()
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db.create_all()
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@classmethod
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def tearDownClass(cls):
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db.drop_all()
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db.session.remove()
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pass
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def setUp(self):
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self.ctx.push()
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def tearDown(self):
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self.ctx.pop()
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self.auths = {}
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def test_add_study_post(self):
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"""Does add study post a new study?"""
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study = Study(TITLE="My Test Document", NETBADGEID="dhf8r")
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form = StudyForm(formdata=None, obj=study)
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r = self.app.post('/new_study', data=form.data, follow_redirects=True)
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assert r.status_code == 200
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added_study = Study.query.filter(
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Study.TITLE == "My Test Document").first()
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assert added_study
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