mirror of
https://github.com/sartography/cr-connect-workflow.git
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fb5b7f72d8
The script accepts a list of file_ids, and generates a list of documents from these ids. The documents are stored in a directory structure generated from the categories in the irb_documents spreadsheet
59 lines
2.5 KiB
Python
59 lines
2.5 KiB
Python
from crc import session
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from crc.api.common import ApiError
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from crc.models.file import FileModel, FileDataModel
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from crc.scripts.script import Script
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from crc.services.file_service import FileService
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from crc.services.study_service import StudyService
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import os
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import zipfile
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class GetZippedFiles(Script):
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"""This script creates a zip document from a list of file ids"""
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def get_description(self):
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"""Creates a zip file from a list of file_ids.
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This is meant to use as an attachment to an email message"""
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def do_task_validate_only(self, task, study_id, workflow_id, *args, **kwargs):
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if 'file_ids' in kwargs.keys():
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return True
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return False
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def do_task(self, task, study_id, workflow_id, *args, **kwargs):
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doc_info = StudyService().get_documents_status(study_id)
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if 'filename' in kwargs.keys():
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zip_filename = kwargs['filename']
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else:
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zip_filename = 'attachments.zip'
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if 'file_ids' in kwargs.keys():
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file_ids = kwargs['file_ids']
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files = session.query(FileModel).filter(FileModel.id.in_(file_ids)).all()
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if files:
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with zipfile.ZipFile(zip_filename, mode='x', compression=zipfile.ZIP_DEFLATED) as zfw:
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for file in files:
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file_doc_info = doc_info[file.irb_doc_code]
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file_path = '/'
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if file_doc_info['category1'] != '':
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file_path = os.path.join(file_path, file_doc_info['category1'])
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if file_doc_info['category2'] != '':
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file_path = os.path.join(file_path, file_doc_info['category2'])
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if file_doc_info['category3'] != '':
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file_path = os.path.join(file_path, file_doc_info['category3'])
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file_data = session.query(FileDataModel).filter(FileDataModel.file_model_id == file.id).first()
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zfw.writestr(os.path.join(file_path, file.name), file_data.data)
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with open(zip_filename, mode='rb') as handle:
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file_model = FileService().add_workflow_file(workflow_id, None, zip_filename, 'application/zip', handle.read())
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os.remove(zip_filename)
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else:
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raise ApiError(code='missing_file_ids',
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message='You must include a list of file_ids.')
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return file_model
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