115 lines
5.7 KiB
Python
115 lines
5.7 KiB
Python
import re
|
|
from io import BytesIO
|
|
|
|
from SpiffWorkflow.exceptions import WorkflowTaskExecException
|
|
|
|
from crc import session
|
|
from crc.api.common import ApiError
|
|
from crc.models.file import CONTENT_TYPES, FileModel
|
|
from crc.models.workflow import WorkflowModel
|
|
from crc.scripts.script import Script
|
|
from crc.services.file_service import FileService
|
|
from crc.services.jinja_service import JinjaService
|
|
from crc.services.workflow_processor import WorkflowProcessor
|
|
|
|
|
|
class CompleteTemplate(Script):
|
|
|
|
def get_description(self):
|
|
return """Using the Jinja template engine, takes data available in the current task, and uses it to populate
|
|
a word document that contains Jinja markup. Please see https://docxtpl.readthedocs.io/en/latest/
|
|
for more information on exact syntax.
|
|
Takes two arguments:
|
|
1. The name of a MS Word docx file to use as a template.
|
|
2. The 'code' of the IRB Document as set in the irb_documents.xlsx file."
|
|
"""
|
|
|
|
def do_task_validate_only(self, task, study_id, workflow_id, *args, **kwargs):
|
|
"""For validation only, process the template, but do not store it in the database."""
|
|
workflow = session.query(WorkflowModel).filter(WorkflowModel.id == workflow_id).first()
|
|
self.process_template(task, study_id, workflow, *args, **kwargs)
|
|
|
|
def do_task(self, task, study_id, workflow_id, *args, **kwargs):
|
|
workflow = session.query(WorkflowModel).filter(WorkflowModel.id == workflow_id).first()
|
|
final_document_stream = self.process_template(task, study_id, workflow, *args, **kwargs)
|
|
file_name = args[0]
|
|
irb_doc_code = args[1]
|
|
FileService.add_workflow_file(workflow_id=workflow_id,
|
|
task_spec_name=task.get_name(),
|
|
name=file_name,
|
|
content_type=CONTENT_TYPES['docx'],
|
|
binary_data=final_document_stream.read(),
|
|
irb_doc_code=irb_doc_code)
|
|
|
|
def process_template(self, task, study_id, workflow=None, *args, **kwargs):
|
|
"""Entry point, mostly worried about wiring it all up."""
|
|
if len(args) < 2 or len(args) > 3:
|
|
raise ApiError(code="missing_argument",
|
|
message="The CompleteTemplate script requires 2 arguments. The first argument is "
|
|
"the name of the docx template to use. The second "
|
|
"argument is a code for the document, as "
|
|
"set in the reference document %s. " % FileService.DOCUMENT_LIST)
|
|
task_study_id = task.workflow.data[WorkflowProcessor.STUDY_ID_KEY]
|
|
file_name = args[0]
|
|
|
|
if task_study_id != study_id:
|
|
raise ApiError(code="invalid_argument",
|
|
message="The given task does not match the given study.")
|
|
|
|
file_data_model = None
|
|
if workflow is not None:
|
|
# Get the workflow specification file with the given name.
|
|
file_data_models = FileService.get_spec_data_files(
|
|
workflow_spec_id=workflow.workflow_spec_id,
|
|
workflow_id=workflow.id,
|
|
name=file_name)
|
|
if len(file_data_models) > 0:
|
|
file_data_model = file_data_models[0]
|
|
else:
|
|
raise ApiError(code="invalid_argument",
|
|
message="Uable to locate a file with the given name.")
|
|
|
|
# Get images from file/files fields
|
|
if len(args) == 3:
|
|
image_file_data = self.get_image_file_data(args[2], task)
|
|
else:
|
|
image_file_data = None
|
|
|
|
try:
|
|
return JinjaService().make_template(BytesIO(file_data_model.data), task.data, image_file_data)
|
|
except ApiError as ae:
|
|
# In some cases we want to provide a very specific error, that does not get obscured when going
|
|
# through the python expression engine. We can do that by throwing a WorkflowTaskExecException,
|
|
# which the expression engine should just pass through.
|
|
raise WorkflowTaskExecException(task, ae.message, exception=ae, line_number=ae.line_number,
|
|
error_line=ae.error_line)
|
|
|
|
def get_image_file_data(self, fields_str, task):
|
|
image_file_data = []
|
|
images_field_str = re.sub(r'[\[\]]', '', fields_str)
|
|
images_field_keys = [v.strip() for v in images_field_str.strip().split(',')]
|
|
for field_key in images_field_keys:
|
|
if field_key in task.data:
|
|
v = task.data[field_key]
|
|
file_ids = v if isinstance(v, list) else [v]
|
|
|
|
for file_id in file_ids:
|
|
if isinstance(file_id, str) and file_id.isnumeric():
|
|
file_id = int(file_id)
|
|
|
|
if file_id is not None and isinstance(file_id, int):
|
|
if not task.workflow.data[WorkflowProcessor.VALIDATION_PROCESS_KEY]:
|
|
# Get the actual image data
|
|
image_file_model = session.query(FileModel).filter_by(id=file_id).first()
|
|
image_file_data_model = FileService.get_file_data(file_id, image_file_model)
|
|
if image_file_data_model is not None:
|
|
image_file_data.append(image_file_data_model)
|
|
|
|
else:
|
|
raise ApiError(
|
|
code="not_a_file_id",
|
|
message="The CompleteTemplate script requires 2-3 arguments. The third argument should "
|
|
"be a comma-delimited list of File IDs")
|
|
|
|
return image_file_data
|