82 lines
3.9 KiB
Python
82 lines
3.9 KiB
Python
import json
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import unittest
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from sqlalchemy import func
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from crc import db
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from crc.models import StudyModel, StudySchema, WorkflowSpecModel, WorkflowSpecSchema, WorkflowModel, WorkflowStatus, \
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WorkflowSchema, TaskSchema
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from crc.workflow_processor import WorkflowProcessor
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from tests.base_test import BaseTest
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class TestStudy(BaseTest, unittest.TestCase):
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def test_study_basics(self):
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self.load_example_data()
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study = db.session.query(StudyModel).first()
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self.assertIsNotNone(study)
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def test_study_api_get_single_study(self):
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self.load_example_data()
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study = db.session.query(StudyModel).first()
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rv = self.app.get('/v1.0/study/%i' % study.id,
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follow_redirects=True,
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content_type="application/json")
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self.assert_success(rv)
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json_data = json.loads(rv.get_data(as_text=True))
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study2 = StudySchema().load(json_data, session=db.session)
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self.assertEqual(study, study2)
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self.assertEqual(study.id, study2.id)
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self.assertEqual(study.title, study2.title)
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self.assertEqual(study.last_updated, study2.last_updated)
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self.assertEqual(study.protocol_builder_status, study2.protocol_builder_status)
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self.assertEqual(study.primary_investigator_id, study2.primary_investigator_id)
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self.assertEqual(study.sponsor, study2.sponsor)
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self.assertEqual(study.ind_number, study2.ind_number)
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def test_list_workflow_specifications(self):
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self.load_example_data()
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spec = db.session.query(WorkflowSpecModel).first()
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rv = self.app.get('/v1.0/workflow-specification',
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follow_redirects=True,
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content_type="application/json")
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self.assert_success(rv)
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json_data = json.loads(rv.get_data(as_text=True))
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specs = WorkflowSpecSchema(many=True).load(json_data, session=db.session)
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spec2 = specs[0]
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self.assertEqual(spec.id, spec2.id)
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self.assertEqual(spec.display_name, spec2.display_name)
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self.assertEqual(spec.description, spec2.description)
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def test_add_workflow_to_study(self):
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self.load_example_data()
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study = db.session.query(StudyModel).first()
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self.assertEqual(0, db.session.query(WorkflowModel).count())
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spec = db.session.query(WorkflowSpecModel).first()
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rv = self.app.post('/v1.0/study/%i/workflows' % study.id,content_type="application/json",
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data=json.dumps(WorkflowSpecSchema().dump(spec)))
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self.assert_success(rv)
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self.assertEqual(1, db.session.query(WorkflowModel).count())
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workflow = db.session.query(WorkflowModel).first()
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self.assertEqual(study.id, workflow.study_id)
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self.assertEqual(WorkflowStatus.user_input_required, workflow.status)
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self.assertIsNotNone(workflow.bpmn_workflow_json)
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self.assertEqual(spec.id, workflow.workflow_spec_id)
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json_data = json.loads(rv.get_data(as_text=True))
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workflows = WorkflowSchema(many=True).load(json_data, session=db.session)
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self.assertEqual(workflows[0].id, workflow.id)
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def test_get_current_user_tasks(self):
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self.load_example_data()
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study = db.session.query(StudyModel).first()
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spec = db.session.query(WorkflowSpecModel).filter_by(id='random_fact').first()
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self.app.post('/v1.0/study/%i/workflows' % study.id, content_type="application/json",
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data=json.dumps(WorkflowSpecSchema().dump(spec)))
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rv = self.app.get('/v1.0/workflow/%i/tasks' % study.id, content_type="application/json")
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self.assert_success(rv)
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json_data = json.loads(rv.get_data(as_text=True))
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tasks = TaskSchema(many=True).load(json_data)
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self.assertEqual("Task_User_Select_Type", tasks[0].name)
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self.assertEqual(3, len(tasks[0].form["fields"][0]["options"])) |