91 lines
4.0 KiB
Python
91 lines
4.0 KiB
Python
import io
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import os
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from unittest.mock import patch
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from crc import app, db
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from crc.models.file import CONTENT_TYPES, FileDataModel, FileModel
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from crc.models.study import StudyModel
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from crc.models.workflow import WorkflowSpecModel, WorkflowModel
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from crc.scripts.required_docs import RequiredDocs
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from crc.scripts.study_info import StudyInfo
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from crc.services.file_service import FileService
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from crc.services.protocol_builder import ProtocolBuilderService
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from crc.services.workflow_processor import WorkflowProcessor
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from tests.base_test import BaseTest
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class TestRequiredDocsScript(BaseTest):
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test_uid = "dhf8r"
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test_study_id = 1
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"""
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1. get a list of only the required documents for the study.
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2. For this study, is this document required accroding to the protocol builder?
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3. For ALL uploaded documents, what the total number of files that were uploaded? per instance of this document naming
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convention that we are implementing for the IRB.
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"""
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def test_validate_returns_error_if_reference_files_do_not_exist(self):
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file_model = db.session.query(FileModel). \
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filter(FileModel.is_reference == True). \
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filter(FileModel.name == FileService.IRB_PRO_CATEGORIES_FILE).first()
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if file_model:
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db.session.query(FileDataModel).filter(FileDataModel.file_model_id == file_model.id).delete()
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db.session.query(FileModel).filter(FileModel.id == file_model.id).delete()
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db.session.commit()
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db.session.flush()
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errors = RequiredDocs.validate()
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self.assertTrue(len(errors) > 0)
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self.assertEquals("file_not_found", errors[0].code)
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def test_no_validation_error_when_correct_file_exists(self):
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self.create_reference_document()
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errors = RequiredDocs.validate()
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self.assertTrue(len(errors) == 0)
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def test_load_lookup_data(self):
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self.create_reference_document()
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dict = FileService.get_file_reference_dictionary()
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self.assertIsNotNone(dict)
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@patch('crc.services.protocol_builder.requests.get')
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def test_get_required_docs(self, mock_get):
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mock_get.return_value.ok = True
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mock_get.return_value.text = self.protocol_builder_response('required_docs.json')
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self.create_reference_document()
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script = RequiredDocs()
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required_docs = script.get_required_docs(12)
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self.assertIsNotNone(required_docs)
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self.assertTrue(len(required_docs) == 5)
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self.assertEquals(6, required_docs[0]['id'])
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self.assertEquals("Cancer Center's PRC Approval Form", required_docs[0]['name'])
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self.assertEquals("UVA Compliance", required_docs[0]['category1'])
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self.assertEquals("PRC Approval", required_docs[0]['category2'])
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self.assertEquals("CRC", required_docs[0]['Who Uploads?'])
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self.assertEquals(0, required_docs[0]['count'])
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@patch('crc.services.protocol_builder.requests.get')
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def test_get_required_docs_has_correct_count_when_a_file_exists(self, mock_get):
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self.load_example_data()
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# Mock out the protocol builder
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mock_get.return_value.ok = True
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mock_get.return_value.text = self.protocol_builder_response('required_docs.json')
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# Make sure the xslt refernce document is in place.
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self.create_reference_document()
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script = RequiredDocs()
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# Add a document to the study with the correct code.
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workflow = self.create_workflow('docx')
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irb_code = "UVACompliance.PRCApproval" # The first file referenced in pb required docs.
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FileService.add_task_file(study_id = workflow.study_id, workflow_id = workflow.id,
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task_id ="fakingthisout",
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name="anything.png", content_type="text",
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binary_data=b'1234', irb_doc_code=irb_code)
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required_docs = script.get_required_docs(workflow.study_id)
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self.assertIsNotNone(required_docs)
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self.assertEquals(1, required_docs[0]['count'])
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