mirror of
https://github.com/sartography/cr-connect-workflow.git
synced 2025-02-23 21:28:32 +00:00
2fc4b44ef3
Fixing pagination. Seems the front end uses a page_index that is 0 based, and sqlAlchemy prefers to start at 1.
118 lines
4.2 KiB
Python
118 lines
4.2 KiB
Python
import enum
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import urllib
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import flask
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import marshmallow
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from flask import url_for
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from marshmallow.fields import Method
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from crc import db, ma
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from crc.models.study import StudyModel
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from crc.models.workflow import WorkflowModel
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from crc.services.workflow_spec_service import WorkflowSpecService
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from sqlalchemy import func
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class MyEnumMeta(enum.EnumMeta):
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def __contains__(cls, item):
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return item in [v.name for v in cls.__members__.values()]
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class TaskLogLevels(enum.Enum, metaclass=MyEnumMeta):
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critical = 50
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error = 40
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warning = 30
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info = 20
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debug = 10
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metrics = 5
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class TaskLogModel(db.Model):
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__tablename__ = 'task_log'
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id = db.Column(db.Integer, primary_key=True)
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level = db.Column(db.String)
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code = db.Column(db.String)
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message = db.Column(db.String)
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user_uid = db.Column(db.String)
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study_id = db.Column(db.Integer, db.ForeignKey(StudyModel.id), nullable=False)
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workflow_id = db.Column(db.Integer, db.ForeignKey(WorkflowModel.id), nullable=False)
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workflow_spec_id = db.Column(db.String)
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task = db.Column(db.String)
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timestamp = db.Column(db.DateTime(timezone=True), server_default=func.now())
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class TaskLogModelSchema(ma.Schema):
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class Meta:
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model = TaskLogModel
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fields = ["id", "level", "code", "message", "study_id", "workflow", "workflow_id",
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"workflow_spec_id", "category", "user_uid", "timestamp"]
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category = marshmallow.fields.Method('get_category')
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workflow = marshmallow.fields.Method('get_workflow')
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@staticmethod
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def get_category(obj):
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if hasattr(obj, 'workflow_spec_id') and obj.workflow_spec_id is not None:
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workflow_spec = WorkflowSpecService().get_spec(obj.workflow_spec_id)
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category = WorkflowSpecService().get_category(workflow_spec.category_id)
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return category.display_name
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@staticmethod
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def get_workflow(obj):
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if hasattr(obj, 'workflow_spec_id') and obj.workflow_spec_id is not None:
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workflow_spec = WorkflowSpecService().get_spec(obj.workflow_spec_id)
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return workflow_spec.display_name
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class TaskLogQuery:
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"""Encapsulates the paginated queries and results when retrieving and filtering task logs over the
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API"""
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def __init__(self, study_id=None, code="", level="", user="", page=0, per_page=10,
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sort_column=None, sort_reverse=False, items=None,
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pages=0, total=0, has_next=False, has_prev=False, download_url=None):
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self.study_id = study_id # Filter on Study.
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self.code = code # Filter on code.
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self.level = level # Filter on level.
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self.user = user # Filter on user.
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self.page = page
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self.per_page = per_page
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self.sort_column = sort_column
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self.sort_reverse = sort_reverse
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self.items = items
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self.total = total
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self.pages = pages
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self.has_next = False
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self.has_prev = False
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self.download_url = None
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def update_from_sqlalchemy_paginator(self, paginator):
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"""Updates this with results that are returned from the paginator"""
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self.items = paginator.items
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self.page = paginator.page - 1
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self.per_page = paginator.per_page
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self.pages = paginator.pages
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self.has_next = paginator.has_next
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self.has_prev = paginator.has_prev
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self.total = paginator.total
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class TaskLogQuerySchema(ma.Schema):
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class Meta:
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model = TaskLogModel
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fields = ["code", "level", "user",
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"page", "per_page", "sort_column", "sort_reverse", "items", "pages", "total",
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"has_next", "has_prev", "download_url"]
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items = marshmallow.fields.List(marshmallow.fields.Nested(TaskLogModelSchema))
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download_url = Method("get_url")
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def get_url(self, obj):
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token = 'not_available'
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if hasattr(obj, 'study_id') and obj.study_id is not None:
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file_url = url_for("/v1_0.crc_api_study_download_logs_for_study", study_id=obj.study_id, _external=True)
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if hasattr(flask.g, 'user'):
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token = flask.g.user.encode_auth_token()
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url = file_url + '?auth_token=' + urllib.parse.quote_plus(token)
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return url
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else:
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return ""
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