202 lines
9.5 KiB
Python
202 lines
9.5 KiB
Python
from tests.base_test import BaseTest
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import json
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from unittest.mock import patch
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import flask
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from crc.api.common import ApiError
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from crc.services.user_service import UserService
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from crc import session, app
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from crc.models.study import StudyModel
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from crc.models.ldap import LdapSchema
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from crc.services.ldap_service import LdapService
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from crc.models.user import UserModel
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from crc.api.study import user_studies
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from crc.services.study_service import StudyService
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from crc.services.workflow_processor import WorkflowProcessor
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from crc.services.workflow_service import WorkflowService
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class TestSudySponsorsScript(BaseTest):
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test_uid = "dhf8r"
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test_study_id = 1
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@patch('crc.services.protocol_builder.requests.get')
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def test_study_sponsors_script_validation(self, mock_get):
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app.config['PB_ENABLED'] = True
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mock_get.return_value.ok = True
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mock_get.return_value.text = self.protocol_builder_response('sponsors.json')
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flask.g.user = UserModel(uid='dhf8r')
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self.load_example_data() # study_info script complains if irb_documents.xls is not loaded
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# during the validate phase I'm going to assume that we will never
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# have a case where irb_documents.xls is not loaded ??
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self.load_test_spec("study_sponsors_associate")
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WorkflowService.test_spec("study_sponsors_associate") # This would raise errors if it didn't validate
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@patch('crc.services.protocol_builder.requests.get')
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def test_study_sponsors_script(self, mock_get):
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mock_get.return_value.ok = True
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mock_get.return_value.text = self.protocol_builder_response('sponsors.json')
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flask.g.user = UserModel(uid='dhf8r')
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app.config['PB_ENABLED'] = True
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self.load_example_data()
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self.create_reference_document()
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study = session.query(StudyModel).first()
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workflow_spec_model = self.load_test_spec("study_sponsors_associate")
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workflow_model = StudyService._create_workflow_model(study, workflow_spec_model)
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WorkflowService.test_spec("study_sponsors_associate")
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processor = WorkflowProcessor(workflow_model)
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processor.do_engine_steps()
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self.assertTrue(processor.bpmn_workflow.is_completed())
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data = processor.next_task().data
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self.assertIn('sponsors', data)
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self.assertIn('out', data)
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print(data['out'])
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dhf8r_info = LdapSchema().dump(LdapService.user_info('dhf8r'))
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lb3dp_info = LdapSchema().dump(LdapService.user_info('lb3dp'))
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self.assertDictEqual({'uid': 'dhf8r', 'role': 'owner', 'send_email': True, 'access': True, 'ldap_info': dhf8r_info},
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data['out'][1])
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self.assertDictEqual({'uid': 'lb3dp', 'role': 'SuperDude', 'send_email': False, 'access': True, 'ldap_info': lb3dp_info},
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data['out'][0])
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self.assertDictEqual({'uid': 'lb3dp', 'role': 'SuperDude', 'send_email': False, 'access': True, 'ldap_info': lb3dp_info},
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data['out2'])
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self.assertDictEqual({'uid': 'dhf8r', 'role': 'owner', 'send_email': True, 'access': True, 'ldap_info': dhf8r_info},
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data['out3'][1])
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self.assertDictEqual({'uid': 'lb3dp', 'role': 'SuperGal', 'send_email': False, 'access': True, 'ldap_info': lb3dp_info},
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data['out3'][0])
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self.assertDictEqual({'uid': 'lb3dp', 'role': 'SuperGal', 'send_email': False, 'access': True, 'ldap_info': lb3dp_info},
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data['out4'])
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self.assertEqual(3, len(data['sponsors']))
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@patch('crc.services.protocol_builder.requests.get')
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def test_study_sponsors_script_fail(self, mock_get):
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mock_get.return_value.ok = True
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mock_get.return_value.text = self.protocol_builder_response('sponsors.json')
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flask.g.user = UserModel(uid='dhf8r')
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app.config['PB_ENABLED'] = True
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self.load_example_data()
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self.create_reference_document()
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study = session.query(StudyModel).first()
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workflow_spec_model = self.load_test_spec("study_sponsors_associate_fail")
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workflow_model = StudyService._create_workflow_model(study, workflow_spec_model)
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WorkflowService.test_spec("study_sponsors_associate_fail")
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processor = WorkflowProcessor(workflow_model)
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with self.assertRaises(ApiError):
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processor.do_engine_steps()
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@patch('crc.services.protocol_builder.requests.get')
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def test_study_sponsors_script_primary_user(self, mock_get):
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mock_get.return_value.ok = True
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mock_get.return_value.text = self.protocol_builder_response('sponsors.json')
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flask.g.user = UserModel(uid='dhf8r')
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app.config['PB_ENABLED'] = True
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self.load_example_data()
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self.create_reference_document()
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study = session.query(StudyModel).first()
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workflow_spec_model = self.load_test_spec("study_sponsors_associate_switch_user")
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workflow_model = StudyService._create_workflow_model(study, workflow_spec_model)
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WorkflowService.test_spec("study_sponsors_associate_switch_user")
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processor = WorkflowProcessor(workflow_model)
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processor.do_engine_steps()
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tasks = processor.next_user_tasks()
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self.assertEqual(len(tasks),1)
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processor.complete_task(tasks[0])
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processor.do_engine_steps()
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self.assertTrue(processor.bpmn_workflow.is_completed())
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@patch('crc.services.protocol_builder.requests.get')
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def test_study_sponsors_script_valid_users(self, mock_get):
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mock_get.return_value.ok = True
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mock_get.return_value.text = self.protocol_builder_response('sponsors.json')
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flask.g.user = UserModel(uid='dhf8r')
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app.config['PB_ENABLED'] = True
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self.load_example_data()
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self.create_reference_document()
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study = session.query(StudyModel).first()
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workflow_spec_model = self.load_test_spec("study_sponsors_associate_switch_user")
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workflow_model = StudyService._create_workflow_model(study, workflow_spec_model)
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WorkflowService.test_spec("study_sponsors_associate_switch_user")
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processor = WorkflowProcessor(workflow_model)
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processor.do_engine_steps()
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tasks = processor.next_user_tasks()
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self.assertEqual(len(tasks),1)
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users = WorkflowService.get_users_assigned_to_task(processor,tasks[0])
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self.assertFalse('cah3us' in users)
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self.assertFalse('lje5u' in users)
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self.assertTrue('lb3dp' in users)
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self.assertTrue('dhf8r' in users)
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# the above should emulate what is going on when we determine if a user can
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# make changes to a study or not.
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# in theory all endpoints that need to be limited are calling the
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# WorkflowService.get_users_assigned_to_task function to determine
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# who is allowed access
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@patch('crc.services.protocol_builder.ProtocolBuilderService.get_study_details') # mock_details
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@patch('crc.services.protocol_builder.requests.get')
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def test_study_sponsors_script_ensure_access(self, mock_get, mock_details):
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mock_get.return_value.ok = True
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mock_get.return_value.text = self.protocol_builder_response('sponsors.json')
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details_response = self.protocol_builder_response('study_details.json')
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mock_details.return_value = json.loads(details_response)
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flask.g.user = UserModel(uid='dhf8r')
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app.config['PB_ENABLED'] = True
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self.load_example_data()
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self.create_reference_document()
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study = session.query(StudyModel).first()
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workflow_spec_model = self.load_test_spec("study_sponsors_associate_switch_user")
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workflow_model = StudyService._create_workflow_model(study, workflow_spec_model)
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WorkflowService.test_spec("study_sponsors_associate_switch_user")
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processor = WorkflowProcessor(workflow_model)
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processor.do_engine_steps()
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# change user and make sure we can access the study
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flask.g.user = UserModel(uid='lb3dp')
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flask.g.token = 'my spiffy token'
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app.config['PB_ENABLED'] = False
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output = user_studies()
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self.assertEqual(output[0]['id'], 0)
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self.assertEqual(output[0]['user_uid'], 'dhf8r')
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flask.g.user = UserModel(uid='lje5u')
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flask.g.token = 'my spiffy token'
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app.config['PB_ENABLED'] = False
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output = user_studies()
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self.assertEqual(len(output),0)
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@patch('crc.services.protocol_builder.requests.get')
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def test_study_sponsors_script_ensure_delete(self, mock_get):
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mock_get.return_value.ok = True
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mock_get.return_value.text = self.protocol_builder_response('sponsors.json')
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flask.g.user = UserModel(uid='dhf8r')
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app.config['PB_ENABLED'] = True
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self.load_example_data()
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self.create_reference_document()
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study = session.query(StudyModel).first()
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workflow_spec_model = self.load_test_spec("study_sponsors_associates_delete")
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workflow_model = StudyService._create_workflow_model(study, workflow_spec_model)
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WorkflowService.test_spec("study_sponsors_associates_delete")
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processor = WorkflowProcessor(workflow_model)
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processor.do_engine_steps()
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# change user and make sure we can access the study
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flask.g.user = UserModel(uid='lb3dp')
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flask.g.token = 'my spiffy token'
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app.config['PB_ENABLED'] = False
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output = user_studies()
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self.assertEqual(len(output),0)
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flask.g.token = 'my spiffy token'
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app.config['PB_ENABLED'] = False
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output = user_studies()
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self.assertEqual(len(output),0)
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