from marshmallow_enum import EnumField from marshmallow_sqlalchemy import SQLAlchemyAutoSchema from sqlalchemy import func from crc import db from crc.models.protocol_builder import ProtocolBuilderStatus, ProtocolBuilderStudy class StudyModel(db.Model): __tablename__ = 'study' id = db.Column(db.Integer, primary_key=True) title = db.Column(db.String) last_updated = db.Column(db.DateTime(timezone=True), default=func.now()) protocol_builder_status = db.Column(db.Enum(ProtocolBuilderStatus)) primary_investigator_id = db.Column(db.String, nullable=True) sponsor = db.Column(db.String, nullable=True) hsr_number = db.Column(db.String, nullable=True) ind_number = db.Column(db.String, nullable=True) user_uid = db.Column(db.String, db.ForeignKey('user.uid'), nullable=False) investigator_uids = db.Column(db.ARRAY(db.String), nullable=True) inactive = db.Column(db.Boolean, default=False) requirements = db.Column(db.ARRAY(db.Integer), nullable=True) def update_from_protocol_builder(self, pbs: ProtocolBuilderStudy): self.hsr_number = pbs.HSRNUMBER self.title = pbs.TITLE self.user_uid = pbs.NETBADGEID self.last_updated = pbs.DATE_MODIFIED self.protocol_builder_status = ProtocolBuilderStatus.DRAFT self.inactive = False if pbs.HSRNUMBER: # And Up load complete? self.protocol_builder_status = ProtocolBuilderStatus.REVIEW_COMPLETE elif pbs.Q_COMPLETE: self.protocol_builder_status = ProtocolBuilderStatus.IN_PROCESS class Study(): def __init__(model: StudyModel, status, stats): self.id = id self.status = status self.user_tasks = user_tasks self.last_task = last_task self.next_task = next_task self.spec_version = spec_version self.is_latest_spec = is_latest_spec class StudyModelSchema(SQLAlchemyAutoSchema): class Meta: model = StudyModel load_instance = True include_relationships = True include_fk = True # Includes foreign keys protocol_builder_status = EnumField(ProtocolBuilderStatus)