from crc import session from crc.api.common import ApiError from crc.models.api_models import WorkflowApi, WorkflowApiSchema from crc.models.workflow import WorkflowModel, WorkflowStatus from crc.scripts.script import Script from crc.services.workflow_processor import WorkflowProcessor from crc.services.workflow_service import WorkflowService class StartWorkflow(Script): def get_description(self): return """Script to start a workflow programmatically. It requires a workflow_spec_id. It accepts the workflow_spec_id as a positional argument or with the keyword 'workflow_spec_id'""" def get_workflow(self, study_id, *args, **kwargs): if len(args) == 1 or 'workflow_spec_id' in kwargs: if 'workflow_spec_id' in kwargs: workflow_spec_id = kwargs['workflow_spec_id'] else: workflow_spec_id = args[0] else: raise ApiError(code='missing_parameter', message=f'The start_workflow script requires a workflow id') workflow = session.query(WorkflowModel).\ filter(WorkflowModel.study_id==study_id).\ filter(WorkflowModel.workflow_spec_id==workflow_spec_id).\ first() if not(workflow): raise ApiError(code='unknown_workflow', message=f"We could not find a workflow with workflow_spec_id '{workflow_spec_id}'.") return workflow def do_task_validate_only(self, task, study_id, workflow_id, *args, **kwargs): self.get_workflow(study_id, *args, **kwargs) def do_task(self, task, study_id, workflow_id, *args, **kwargs): workflow_model = self.get_workflow(study_id, *args, **kwargs) if workflow_model.status != WorkflowStatus.not_started: return # This workflow has al ready started, don't execute these next very expensive lines. processor = WorkflowProcessor(workflow_model) processor.do_engine_steps() processor.save() WorkflowService.update_task_assignments(processor)