sartography/cr-connect-workflow
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273 Commits

Author SHA1 Message Date
Aaron Louie
9afcd753c4 No longer requires task_id 2020-05-06 14:27:28 -04:00
Dan Funk
1571986c0e I had to give up and live with the idea that we can only render documentation on the current task, not on the previous or next tasks. I think this is ok. If you want to view a task, you need to make it the active task to assure all the parts and pieces are in place. 2020-05-06 13:01:38 -04:00
Dan Funk
8ded625c7d Merge remote-tracking branch 'origin/chore/update_specs' into feature/previous_task 
# Conflicts:
#	Pipfile.lock

Assuring that all documents from the xls spreadsheet are loaded when doing validations.
Fixing some failed tests.
 2020-05-06 11:46:19 -04:00
Dan Funk
07e58e923d Merge remote-tracking branch 'origin/chore/update_specs' into feature/previous_task 
# Conflicts:
#	Pipfile.lock

Assuring that all documents from the xls spreadsheet are loaded when doing validations.
 2020-05-06 11:25:50 -04:00
Dan Funk
9629b36e92 Setting JSON_SORT_KEYS to false, assuring that Flask does not resort all data returned to the front end. 
Updating Spiff Workflow which has some critical behavioral changes around MultiInstance.
 2020-05-06 10:59:49 -04:00
Aaron Louie
6c36a32411 Adds DSP 2020-05-06 10:37:43 -04:00
Aaron Louie
a8827d78c4 Fixes typo 2020-05-05 20:49:07 -04:00
Aaron Louie
4ecb0cb3a3 Updates BPMN files 2020-05-05 16:15:38 -04:00
Dan Funk
ce76b0d3e8 Merge branch 'feature/protocol_status' into feature/previous_task 2020-05-04 11:12:12 -04:00
Dan Funk
714b5f3be0 Merge branch 'feature/protocol_status' into feature/previous_task 
# Conflicts:
#	crc/services/study_service.py
 2020-05-04 11:08:36 -04:00
Dan Funk
2699f5c65c Refactor the stats models, and assure they are very correct across all tests with the workflow api. 
I noticed we were saving the workflow every time we loaded it up, rather than only when we were making changes to it.  Refactored this to be a little more careful.
Centralized the saving of the workflow into one location in the processor, so we can make sure we update all the details about that workflow every time we save.
The workflow service has a method that will log any task action taken in a consistent way.
The stats models were removed from the API completely.  Will wait for a use case for dealing with this later.
 2020-05-04 10:57:09 -04:00
Aaron Louie
28d5727851 Merge branch 'master' into feature/protocol_status 2020-05-01 22:55:59 -04:00
Aaron Louie
098cf10926 Fixes Jinja code to match new structure of StudyInfo documents 2020-05-01 22:49:52 -04:00
Aaron Louie
6a96ccffa2 Updates pipenv hashes. Fixes typo in SpiffWorkflow file name 2020-05-01 21:54:01 -04:00
Dan Funk
1f5002680a Initial work on a "Previous" task. 2020-05-01 12:11:39 -04:00
Dan Funk
bec59a71d7 Deleteing stuff is a damn mess, but this is a little cleaner. 2020-04-29 16:07:39 -04:00
Dan Funk
f1f8b91c9c Refactor the document details scripts. Now there is one script, it returns data in a consistent format, and has all the details required. The script is located in StudyInfo, with the argument documents. Make note that it returns a dictionary of ALL the documents, with a field to mark which ones are required according to the protocol builder. Others may become required if a workflow determines such, in which case the workflow will enforce this, and the document will have a count > 0, and additional details in a list of files within the document. I modified the XLS file to use lower case variable names, because it disturbed me, and we have to reference them frequently. Removed devious "as_object" variable on get_required_docs, so it behaves like the other methods all the time, and returns a dictionary. All the core business logic for finding the documents list now resides in the StudyService. 
Because this changes the endpoint for all existing document details, I've modified all the test and static bpmn files to use the new format.
Shorting up the SponsorsList.xls file makes for slightly faster tests. seems senseless to load 5000 everytime we reset the data.
Tried to test all of this carefully in the test_study_details_documents.py test.
 2020-04-29 15:08:11 -04:00
Aaron Louie
beb86f0453 Adds protocol script to study service 2020-04-29 10:21:24 -04:00
Dan Funk
13333fb306 Adding an API endpoint that allows setting the token on the workflow to a specific task. 
Added error checking such that attempting to submit data for a task that is not in the "READY" state throws an error message.
For some reason I'm getting lots of errors in the tests as they try to hit API endpoints they were not hitting before, so adding a number of mocks to some of the study service tests.
 2020-04-28 17:25:53 -04:00
Dan Funk
0088364b1d Merge branch 'master' of github.com:sartography/cr-connect-workflow 2020-04-28 13:48:52 -04:00
Dan Funk
3e3a249e3c Verifying Sub-Process works, and adding a field to expose a hint as to the sub-process in which the task occurs. 
Because the name field is now used to expose workflow/sub-process information on tasks, we can't use it to store the workflow_version, so that is now just stored on the database model.  Which is much cleaner and removes a duplication.
 2020-04-28 13:48:44 -04:00
Aaron Louie
663a1a00a8 Fixes file name so it matches workflow spec ID 2020-04-28 11:50:10 -04:00
Aaron Louie
9311a2502a Fixes broken Formly expression 2020-04-28 09:25:44 -04:00
Aaron Louie
52fc3c2c2f Removes xlsx lock file. Adds LibreOffice lock files to gitignore 2020-04-27 22:58:12 -04:00
Aaron Louie
496e5b7719 Updates all workflow specs to match staging 2020-04-27 22:54:05 -04:00
Dan Funk
447f4013f8 Assure that a hard-reset sticks, and the system is properly updated. 2020-04-27 16:08:23 -04:00
Dan Funk
1b9743a4d1 Assure that if a form has an enumeration it errors out if that enumeration is empty. 2020-04-27 15:10:09 -04:00
Aaron Louie
8ed520c6f1 Removes hidden workflows 2020-04-24 09:45:55 -04:00
Aaron Louie
c85173de88 Sorts approvals by display order 2020-04-24 08:54:14 -04:00
Dan Funk
1ccedbc9fd Merge branch 'master' of github.com:sartography/cr-connect-workflow 2020-04-24 07:01:40 -04:00
Dan Funk
12eb039bc9 Server isn't erroring out, but can't find the lookup table id in the database, so trying to use the in-memory model instead, to give things time to get to the database. Really unsure what is happening here. Hard to see in the database. 2020-04-24 07:01:32 -04:00
Aaron Louie
af1bb9f80d Adds more useful metadata to approvals and documents status scripts. Fleshes out and pretties up Documents & Approvals screen 2020-04-23 23:32:20 -04:00
Aaron Louie
47de010a88 Puts data from sequential calls to StudyInfo into the right place. Sets the required document flag correctly. 2020-04-23 21:02:08 -04:00
Aaron Louie
d91f690388 Adds documents_status StudyInfo script. Adds Documents & Approvals workflow spec. 2020-04-23 19:25:01 -04:00
Aaron Louie
2e601719ad Fixes broken spec 2020-04-23 17:10:10 -04:00
Dan Funk
08140eca17 Merge branch 'master' of github.com:sartography/cr-connect-workflow 2020-04-23 15:01:02 -04:00
Dan Funk
3aeb7ad116 Server isn't erroring out, but can't find the lookup table id in the database, so trying to use the in-memory model instead, to give things time to get to the database. Really unsure what is happening here. Hard to see in the database. 2020-04-23 14:58:17 -04:00
Aaron Louie
796c109611 Adds approvals to study service 2020-04-23 14:40:05 -04:00
Dan Funk
b5b46b7c2c better overall search results for type ahead. Still dealing with stop words failing. 2020-04-23 12:05:08 -04:00
Dan Funk
65b29e1a9d Don't just bomb out as soon as someone types an empty string. 2020-04-23 09:44:11 -04:00
Dan Funk
7b085c9c9d Adding an API Endpoint that will return a list of LookupValues that match a given query - can be used to populate an auto-complete table. 2020-04-22 19:40:40 -04:00
Dan Funk
6de8c8b977 Create lookup tables for XSL files referenced in workflows so we can do full text searches and populate lists on the fly quickly. 2020-04-22 15:37:02 -04:00
Dan Funk
79d9a66ce3
Merge pull request #32 from sartography/feature/new_study_states 
Updated the study status to use a different enumeration.  Migration c…
 2020-04-21 17:21:10 -04:00
Dan Funk
fd0adb1d43 Updated the study status to use a different enumeration. Migration correctly handles modifying the enum. 
INCOMPLETE = 'Incomplete in Protocol Builder',
  ACTIVE = 'Active / Ready to roll',
  HOLD = 'On Hold',
  OPEN = 'Open - this study is in progress',
  ABANDONED = 'Abandoned, it got deleted in Protocol Builder'
 2020-04-21 17:13:30 -04:00
Aaron Louie
b10f72c085 Updates workflow spec. Removes old DMN files 2020-04-21 14:19:57 -04:00
Dan Funk
0a74bf8c44 We can now collect, and provide "extension properties" on a task as set in the camunda modeler. 
These are provided as "properties" on a task, and are identical in structure to properties on a form field.
 2020-04-21 12:07:59 -04:00
Dan Funk
ec112f52be Make use of cleaner data provided by Spiffworkflow about multi-instance settings. 2020-04-21 11:43:43 -04:00
Dan Funk
ee999a0f15 fixing a bunch of stupid mistakes because I am tried. 2020-04-20 20:28:12 -04:00
Dan Funk
d2b31bb3d1
Merge pull request #31 from sartography/feature_personnel_multi_instance 
Feature personnel multi instance
 2020-04-20 16:17:43 -04:00
Dan Funk
edbd75bb75 Connect LDAP Requests to the StudyInfo service so we get back additional details. 2020-04-20 16:02:13 -04:00