Commit Graph

1954 Commits

Author SHA1 Message Date
mike cullerton fb5b7f72d8 New script to created a zipped file of irb_documents for use as an email attachment.
The script accepts a list of file_ids, and generates a list of documents from these ids.
The documents are stored in a directory structure generated from the categories in the irb_documents spreadsheet
2021-08-26 08:31:01 -04:00
Dan 4b9c5bd3e8 Fixing a stupid mistake. 2021-08-24 12:10:59 -04:00
Dan 0f67cbf576 Bumping SpiffWorkflow with updates to support DMN v1.3 2021-08-20 13:50:10 -04:00
Dan 0bd1c282a3 Merge branch 'dev' of github.com:sartography/cr-connect-workflow into dev 2021-08-20 13:46:08 -04:00
Mike Cullerton 5692f7d377
Merge pull request #359 from sartography/413-LibraryCleanup
413 library cleanup
2021-08-18 13:39:37 -04:00
Dan afaecfa21c Catching an error when variables conflict with repeating section variables. 2021-08-18 13:38:34 -04:00
Mike Cullerton feb72af32e
Update workflow.py
Just completing a comment so I understood
2021-08-18 13:27:28 -04:00
Kelly McDonald f3f42eea2b Fixes #413
Add test for cleanup
2021-08-18 08:33:44 -04:00
Kelly McDonald b4ecb0f97a Add backref cascade and make changes to the spot where we delete so it loads objects into memory and then uses the SQLAlchemy plumbing to make sure that the db object gets cleaned up. 2021-08-18 08:25:17 -04:00
Mike Cullerton b09f5c53ff
Merge pull request #358 from sartography/chore/timestamp_wrong
Fixes #383 - Timestamp on files is UTC?
2021-08-17 13:54:23 -04:00
Leashys 032aad9bc4 Fixes #383 - Timestamp on files is UTC?
also this includes the shield test thing for the boolean_type property whoopsie
2021-08-17 13:04:24 -04:00
Dan Funk 9ca3fd4e12
Merge pull request #356 from sartography/bug/missing_pi_name_246
Bug/missing pi name 246
2021-08-17 11:28:38 -04:00
Dan 7a8eeab820 Merge branch 'dev' into bug/missing_pi_name_246 2021-08-17 11:16:03 -04:00
Dan 6ce560cc2d Made a stupid mistake in a hot fix, causing the builds to fail. 2021-08-17 10:14:49 -04:00
Dan Funk c831ee7e4a
Merge pull request #357 from sartography/426-remove-hsr-number
remove hsr number #426
2021-08-17 09:58:56 -04:00
Dan 78f79a67b7 removing exectue flag. 2021-08-17 09:52:02 -04:00
Dan 4e0e162fd6 Removing the execution flag Nile keeps adding to files. 2021-08-17 09:50:57 -04:00
Dan 77de2a8f47 Merge branch 'dev' into bug/missing_pi_name_246 2021-08-17 09:47:09 -04:00
Dan 0a2597ae36 Just a quick hot fix so that when can still report errors back to the UI even when the task_data can't be serialized, which can happen when functions are defined. 2021-08-17 09:43:08 -04:00
nilez 07ffcd7c76 Dependencies In Testing are behind this avoids that issue. https://sonarcloud.io/project/issues?id=sartography_cr-connect-workflow&pullRequest=356&resolved=false&types=BUG 2021-08-16 23:46:39 -04:00
mike cullerton fcebc6ac2b Revision file for DB changes 2021-08-16 13:02:12 -04:00
mike cullerton ab8714c93e Remove HSRNUMBER from mock data 2021-08-16 13:01:51 -04:00
mike cullerton 3f44c202ca Merge branch '417-hsr-open-to-enrollment-bug' into 426-remove-hsr-number 2021-08-16 12:55:24 -04:00
mike cullerton b3fd72de8b Remove hsr_number from Study Schema 2021-08-16 12:51:48 -04:00
mike cullerton 1f82143aea Remove HSR Number from models 2021-08-16 12:50:09 -04:00
mike cullerton 46d7b13326 Start to remove HSR Number 2021-08-16 12:09:02 -04:00
nilez 0a232dace6 assertEquals -> assertEqual 2021-08-16 10:25:41 -04:00
nilez b9d4f6c436 assertEquals -> assertEqual 2021-08-16 10:18:29 -04:00
nilez f8dd4c3eb9 Check Study Associates Endpoint 2021-08-16 09:32:02 -04:00
mike cullerton febcb1ac5b Clarified my comments 2021-08-13 12:36:43 -04:00
mike cullerton 58119c8969 Modified `test_get_all_studies` so they don't fail looking for studies that are open for enrollment
We will soon have a new way to automatically set study status to `Open for Enrollment`, so I left the failing tests there and commented them out for now.
2021-08-13 12:32:11 -04:00
mike cullerton bd4a9cced3 We no longer use HSRNUMBER to automatically set Study Status to `Open for Enrollment` 2021-08-13 12:06:27 -04:00
nilez 4a2581e938 get studies raises and error when invalid studies are the only studies associated with the user 2021-08-12 14:03:44 -04:00
nilez 7027392a1b Merge remote-tracking branch 'origin/bug/missing_pi_name_246' into bug/missing_pi_name_246
# Conflicts:
#	crc/services/workflow_service.py
#	tests/study/test_study_associate_script.py
2021-08-12 13:01:41 -04:00
nilez e32c1db4c8 Merge remote-tracking branch 'origin/dev' into bug/missing_pi_name_246
# Conflicts:
#	crc/models/study.py
#	crc/services/study_service.py
#	crc/services/workflow_service.py
#	tests/study/test_study_associate_script.py
2021-08-12 12:59:15 -04:00
Dan 000de03733 Just a quick hot fix so that when can still report errors back to the UI even when the task_data can't be serialized, which can happen when functions are defined. 2021-08-12 12:49:19 -04:00
nilez 41e27cb454 Merge remote-tracking branch 'origin/dev' into bug/missing_pi_name_246
# Conflicts:
#	crc/models/study.py
#	crc/services/study_service.py
#	crc/services/workflow_service.py
#	tests/study/test_study_associate_script.py
2021-08-12 12:39:04 -04:00
nilez d20b68e483 Fixed Deprecation Warnings in Test Files 2021-08-12 12:33:27 -04:00
nilez 2732071585 Merge branch 'dev' into bug/missing_pi_name_246 2021-08-12 12:07:25 -04:00
Dan 40727c7ce6 avoid erroring out when unable to calculate a value expression as a part of finding a default value. 2021-08-12 11:35:05 -04:00
Dan Funk adb1b74822
Merge pull request #352 from sartography/post-process-empty-field-408
Post process empty field #408
2021-08-12 10:53:26 -04:00
mike cullerton e0096ebc8e Test and BPMN to make sure we don't process when field is hidden, but do process when field is not hidden 2021-08-11 16:44:45 -04:00
mike cullerton d07bac27ca Fix for hidden file data field.
We were processing a field that didn't have a value.
Ticket 408
2021-08-11 16:43:50 -04:00
Dan 172448386c bouncing spiffworkflow to pick up some recent changes. 2021-08-11 15:13:48 -04:00
Dan 318cd34f81 bouncing to fix a bug in SpiffWorkflow that was holding outo outdated data deed within the python_script_engine.
This caused validation to fail for valid repeat sections, so including a fix to allow that validation to continue.
2021-08-11 14:21:23 -04:00
Dan Funk fd468f1013
Merge pull request #347 from sartography/bug/pi_name_missing_246
Bug/pi name missing 246
2021-08-10 16:29:09 -04:00
Dan 848c2e622f Always use a schema to define what is being returned, it enforces consistency of the API and internally we can depend on well defined objects. 2021-08-10 16:16:08 -04:00
Dan 913c12c02d Merge branch 'dev' into bug/pi_name_missing_246 2021-08-10 15:06:52 -04:00
Dan Funk cdf454b705
Merge pull request #351 from sartography/367b-CallActivity
Finish #367 - Make sure that we only use a primary_id if it is in the…
2021-08-10 12:56:25 -04:00
Kelly McDonald 960d302c03 Finish #367 - Make sure that we only use a primary_id if it is in the workflow that we are currently working on - otherwise it is a library and might have its own primary id. 2021-08-10 09:15:38 -04:00