2d4a68da6d
Added test for deleting files on restart.
2021-04-15 11:30:17 -04:00
69396f9888
Modified base_test restart_workflow_api to accept and pass on the new delete_files argument when restarting a workflow
2021-04-15 11:28:35 -04:00
91e80d01bc
Added delete_files argument to the workflow_processor reset method.
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Added code to delete the files when delete_files is True.
2021-04-15 11:25:58 -04:00
3332b9c7c0
Added delete_files argument to the restart_workflow api method, and pass it along to WorkflowProcessor.reset
2021-04-15 11:23:20 -04:00
4615649938
Added delete_files argument to the workflow restart api endpoint
2021-04-15 11:21:51 -04:00
949f3be403
give an endpoint to return all files associated with a study
2021-04-12 12:23:33 -04:00
069de83bd5
forgot to include a bpmn for the tests.
2021-04-09 09:02:43 -04:00
6427a54d74
Set the correct default value on enumerations - if it is a multi-select enum (checkbox is set) then it should return a default value of an empty array, and not a dictionary.
2021-04-09 08:40:58 -04:00
99394ef953
Fix to spiffworkflow.
2021-04-08 16:11:49 -04:00
41310b6879
Allow both a keyword argument, a single argument when calling delete_file. And call it "delete_file" to be more conssitent with existing scripts.
2021-04-08 13:42:17 -04:00
611c72f431
Merge pull request #284 from sartography/delete-uploaded-file-script-283
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Delete uploaded file script #283
2021-04-08 12:42:30 -04:00
b0896548f2
Merge pull request #285 from sartography/dependabot/pip/deploy/urllib3-1.26.4
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Bump urllib3 from 1.26.3 to 1.26.4 in /deploy
2021-04-08 12:35:30 -04:00
e3302c56ea
Bump urllib3 from 1.26.3 to 1.26.4 in /deploy
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Bumps [urllib3](https://github.com/urllib3/urllib3 ) from 1.26.3 to 1.26.4.
- [Release notes](https://github.com/urllib3/urllib3/releases )
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst )
- [Commits](https://github.com/urllib3/urllib3/compare/1.26.3...1.26.4 )
Signed-off-by: dependabot[bot] <support@github.com>
2021-04-06 18:08:27 +00:00
5155db89f9
Added test for deleting multiple files.
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Fixed existing tests to accommodate changes to test workflow bpmn file
2021-04-05 15:13:32 -04:00
70fbd49aab
Modified my test workflow so it works better for testing multiple file deletions
2021-04-05 15:12:14 -04:00
f8428378e2
You can now delete a document or list of documents.
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Also, refactored the fancy bits into `process_document_deletion`
2021-04-05 15:11:06 -04:00
33cef2bd2a
Added tests for failing conditions
2021-04-05 13:19:29 -04:00
c6b1fd4e52
Fix for failing tests. Q_COMPLETE is no longer a column in the PB Mock study table.
2021-04-05 13:18:56 -04:00
61f37ff894
Changed the order of imports so I could debug a failing test
2021-04-05 13:16:43 -04:00
f0f5cff8d7
Added some checks to do_task to look for valid irb_doc_code and whether or not we found a file
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Added code for do_task_validate
2021-04-05 13:15:09 -04:00
4fd8fd13f8
Remove approvals from the study_info script. It was broken, and isn't really possible in this way anymore
2021-04-05 12:52:23 -04:00
501487b31c
Assure we convert to box for validations as well, and test the bloodly snot out of this.
2021-04-05 12:47:50 -04:00
727aa72e18
Fix a bug from recent performance improvments - be sure that our study info script returns dicts that can be referenced immediately with dot notation, as this is a common pattern in our bpmn script tasks.
2021-04-05 11:31:06 -04:00
9317e49e65
Merge branch 'dev' into delete-uploaded-file-script-283
2021-04-05 10:40:33 -04:00
9f66a938f2
Update pip
2021-04-05 10:19:29 -04:00
d81497f8cb
Test and workflow for new script to delete IRB documents
2021-04-05 08:55:41 -04:00
0eb6291740
Script to delete an IRB document. Takes an `irb_document` argument.
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Deletes all files associated with the workflow with that IRB document code
2021-04-05 08:55:02 -04:00
7ef43fd477
Merge pull request #279 from sartography/263-optimize-dashboard
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263 optimize dashboard
2021-04-02 18:54:56 -04:00
9dca220089
updating package.lock
2021-04-02 17:58:43 -04:00
dcb4e7b736
fixing an error by taking a bit of the magic out of one of Mike's regex hinting tools. I figure the hint is still good, and a little less bittle, and all the information is already there if people need to dig.
2021-04-02 17:58:27 -04:00
3ad3a086ba
Merge branch 'dev' into 263-optimize-dashboard
2021-04-02 17:12:02 -04:00
8edcb4fbc0
Merge remote-tracking branch 'origin/dev' into 263-optimize-dashboard
2021-04-02 17:11:21 -04:00
c7a07af88b
Merge pull request #276 from sartography/dependabot/pip/lxml-4.6.3
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Bump lxml from 4.6.2 to 4.6.3
2021-04-02 17:10:53 -04:00
2100f27976
fixing the api.yml file which was starting to throw errors when updating the libraries.
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Seems that sqlalchemy now has a hard time incrementing sequences, so putting in a fix for this.
Upgrading many of our libraries, to avoid any disconnects as we try to handle security patches from these automated bumps.
2021-04-02 17:10:05 -04:00
51b8b4f52c
Merge remote-tracking branch 'origin/dev' into dependabot/pip/lxml-4.6.3
2021-04-02 15:11:09 -04:00
33a87f6c35
Merge branch 'dev' into dependabot/pip/lxml-4.6.3
2021-04-02 14:55:59 -04:00
6083cacc4a
Merge pull request #268 from sartography/dependabot/pip/deploy/urllib3-1.26.3
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Bump urllib3 from 1.26.2 to 1.26.3 in /deploy
2021-04-02 14:55:34 -04:00
ae1e847d73
Merge pull request #278 from sartography/dependabot/pip/deploy/pygments-2.7.4
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Bump pygments from 2.7.2 to 2.7.4 in /deploy
2021-04-02 14:35:36 -04:00
cfa8003173
Merge branch 'dev' into dependabot/pip/deploy/urllib3-1.26.3
2021-04-02 14:32:03 -04:00
d7894f43b6
These changes relate to changes in PB Mock ticket 273, where we removed Q_COMPLETE as a column in the PB Mock Study table. It is now a relationship.
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Here, we removed Q_COMPLETE from ProtocolBuilderStudy and ProtocolBuilderStudySchema definitions to accommodate the PB Mock changes.
***This push will need to be coordinated with ticket 273***
2021-04-02 12:01:00 -04:00
116bf5e7aa
Merge branch 'dev' into 263-optimize-dashboard
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# Conflicts:
# crc/services/study_service.py
2021-03-31 10:20:33 -04:00
9084866015
Update error message - it may be that we should spend a bit and see if we can make the Box error
2021-03-31 10:17:08 -04:00
60f5be1aef
Check in - pending change from @cullerton
2021-03-30 12:10:49 -04:00
0feee28ba1
Bump pygments from 2.7.2 to 2.7.4 in /deploy
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Bumps [pygments](https://github.com/pygments/pygments ) from 2.7.2 to 2.7.4.
- [Release notes](https://github.com/pygments/pygments/releases )
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES )
- [Commits](https://github.com/pygments/pygments/compare/2.7.2...2.7.4 )
Signed-off-by: dependabot[bot] <support@github.com>
2021-03-29 23:39:17 +00:00
b5d4df595f
Merge pull request #271 from sartography/master-workflow-status-messages-222
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Master workflow status messages 222
2021-03-26 20:52:24 -04:00
ded11ddd82
fixing a code smell
2021-03-26 20:25:34 -04:00
14f3c5b413
Merge branch 'dependabot/pip/lxml-4.6.3' of github.com:sartography/cr-connect-workflow into dependabot/pip/lxml-4.6.3
2021-03-26 20:07:48 -04:00
a28f1f3750
Bump lxml from 4.6.2 to 4.6.3
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Bumps [lxml](https://github.com/lxml/lxml ) from 4.6.2 to 4.6.3.
- [Release notes](https://github.com/lxml/lxml/releases )
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt )
- [Commits](https://github.com/lxml/lxml/compare/lxml-4.6.2...lxml-4.6.3 )
Signed-off-by: dependabot[bot] <support@github.com>
2021-03-26 23:56:10 +00:00
00bdeb17c0
Merge remote-tracking branch 'origin/dev' into dependabot/pip/lxml-4.6.3
2021-03-26 19:55:46 -04:00
8176d7e2b6
Merge pull request #275 from sartography/dependabot/pip/deploy/lxml-4.6.3
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Bump lxml from 4.6.2 to 4.6.3 in /deploy
2021-03-26 19:50:43 -04:00
mike cullerton
Kelly McDonald
Dan
dependabot[bot]