Commit Graph

395 Commits

Author SHA1 Message Date
Carlos Lopez f581bd9f2b Mails for approval process 2020-06-04 00:35:59 -06:00
Dan Funk 299ad4fc8b Adding more details to the csv output, and assuring we don't miss people with outstanding approvals that were cancelled. 2020-06-03 07:58:48 -04:00
Dan Funk 4bf13b0718 Doing everything I can imagine to get a CSV dump out tomorrow. 2020-06-02 22:01:49 -04:00
Dan Funk 2424b9d78c Don't overwrite the approval, just allow minor changes. 2020-06-02 19:36:06 -04:00
Dan Funk c7484267e1 For the main approval endpoints - we now group the approvals by study. So you get one record back for each study, but it may have other approvals along with it as "related_approvals".
We now cache the LDAP records - so we look in our own database for the record before calling out to ldap for the details when given a straight up computing id like dhf8r.

Added "date_approved" to the approval model.

And moved the approver and primary investigator into real associated models to make it easier to dump.

Fixed a problem with the validation that was causing it to throw incorrect errors on valid workflows. Getting it to behave a little more like the front end behaves, and respecting the read-only fields.  But it was mainly to do with always returning all the data with each form submission.
2020-06-02 18:17:00 -04:00
Dan Funk 59e91ec414 Don't add an empty approval record. 2020-06-02 08:35:19 -04:00
Dan Funk d8329e9eff I completely missed pushing up my changes last night before handing back over to Carlos. Sorry about that.
Added checks to assure the approver matches g.uid of the current user - otherwise don't modify the approval record.
2020-06-02 07:43:19 -04:00
Dan Funk 4090667a5d Missed committing a pile of changes last night. 2020-06-02 07:08:29 -04:00
Dan Funk a78db8834c
Merge pull request #99 from sartography/feature/sentry
Enabling Sentry for boxes with the flag set
2020-06-02 06:28:06 -04:00
Dan Funk d0918e9ed3
Merge pull request #98 from sartography/fix/approvals-info
Approval info addition
2020-06-02 06:26:56 -04:00
Carlos Lopez 95a3b22bf0 Enabling Sentry for boxes with the flag set 2020-06-01 19:59:55 -06:00
Dan Funk c2a1b0175a Tweaks to approvals 2020-06-01 21:49:30 -04:00
Carlos Lopez 3c2849f40d Approval info addition 2020-06-01 15:29:59 -06:00
Aaron Louie 51accc350c Updates doc template 2020-06-01 13:37:44 -04:00
Aaron Louie 885ce5668e Updates RRT workflow spec files 2020-06-01 13:29:57 -04:00
Dan Funk c790737bf0 The complete_template script might not grab the correct document when validating, fixed.
Updated to latest RRT files, and passing.
2020-06-01 12:33:58 -04:00
Dan Funk b6bf843f6e used 'name' rather than 'value' in the lookup options during validation, causing a disconnect with how this is processed on the front end. 2020-06-01 11:00:56 -04:00
Aaron Louie 7c8b7829ea Merge branch 'rrt/dev' into feature/approvals_enhancements 2020-06-01 00:41:51 -04:00
Aaron Louie 1702ab2576 Fixes decision tables that were causing failing tests 2020-06-01 00:36:25 -04:00
Aaron Louie ea441dbff5 More updates 2020-06-01 00:28:37 -04:00
Aaron Louie 8092bbe682 Wrong file in wrong place. 2020-06-01 00:17:20 -04:00
Aaron Louie 7351dc4a43 Updates RRT workflow spec files for reals this time 2020-06-01 00:14:09 -04:00
Aaron Louie 2d5eb740ef Updates RRTworkflow spec files 2020-06-01 00:07:50 -04:00
Carlos Lopez bec11980eb Fixing broken test by using proper FileSchema 2020-05-31 22:00:52 -06:00
Carlos Lopez b2e56f797b Converting ApprovalModel to Approval in order to serialize properly the result 2020-05-31 21:02:47 -06:00
Aaron Louie cd16b984e0 Adds workflow spec title to workflow api schema 2020-05-31 22:46:56 -04:00
Aaron Louie f0bd8d4f9e Adds approvals to study schema. Adds approvals endpoint 2020-05-31 22:46:32 -04:00
Dan Funk 9c7de39b09 This adds additional file data details to the study model as well. 2020-05-31 21:15:40 -04:00
Carlos Lopez dd6c1d2b42 Renaming approval files 2020-05-31 18:16:42 -06:00
Carlos Lopez 2e54f07095 Adding more info to files and renaming approval waiting status 2020-05-31 17:24:23 -06:00
Carlos Lopez 26809d1470 Waiting status renaming 2020-05-31 13:35:42 -06:00
Dan Funk 2bc735a3f0 Kelly wrote a beautiful method for resetting the workflow that doesn't loose data when reset inside a parallel task, all I needed to do was use it.
Catching TypeErrors and reporting them back to the UI so we don't 500 in a bad way (but we still 500)
2020-05-31 13:48:00 -04:00
Dan Funk 98fb305868 Run the validation process twice, each time it is requested, first populating everything, and then a second time
using on the required form fields.
2020-05-30 18:43:20 -04:00
Dan Funk 1f0e8741ba Run the validation twice, once completing all of the data, and a second time, completing only the required fields.
Also, add a helper method to reduce boiler plate code around Workflow Exceptions.
2020-05-30 17:26:27 -04:00
Dan Funk 860c475b29 Fill out repeating sections during validation process.
Also, when returning error messages, attempt to include the task data for the task that caused the error.
Also, when attempting to delete any file, respond with an API error explaining the issue, and log the details.
2020-05-30 15:37:04 -04:00
Dan Funk d51fbe51e0 Merge branch 'dev' of github.com:sartography/cr-connect-workflow into dev 2020-05-29 15:18:41 -04:00
Dan Funk 4e4cc7884c Better ldap searching. 2020-05-29 15:17:51 -04:00
Aaron Louie 34b812b74e Updates RRT workflow spec files 2020-05-29 10:49:47 -04:00
Dan Funk 895d2f8852 Slight change to the way the approval model is connected. 2020-05-29 05:04:18 -04:00
Dan Funk 0ba2819867 Merge branch 'dev' into feature/approval_request_script 2020-05-29 04:51:50 -04:00
Dan Funk afb6be7c60 re-working the way the redirects function, so we pass arguments as a get parameter. Just trying to get rid of the weird lag on production.
I noticed the validation sometimes looks ahead for files, so looking at all the tasks now, not just the ready tasks for the lookup field.
Ran into an issue with validation where a workflow model was required, so I create one and delete it.  Another refactor for another day.
2020-05-29 04:42:48 -04:00
Dan Funk 11413838a7 Faster lookup fields. We were parsing the spec each time to get details about how to search. We're just grabbing the workflow id and task id now and building that straight into the full text search index for faster lookups. Should be peppy.
Another speed improvement - data in the FileDataModel is deferred, and not queried until it is specifically used, as the new data structures need to use this model frequently.
2020-05-29 01:39:39 -04:00
Dan Funk aea78de066 Merge remote-tracking branch 'origin/dev' into feature/file_refactor_part2 2020-05-28 20:06:32 -04:00
Dan Funk dba41f4759 Ludicrously stupid launch in a refactor of the way all files work in the system at a time where I crave sleep and peace above all other things.
Added a File class, that we wrap around the FileModel so the api endpoints don't change, but File no longer holds refences to versions or dates of the file_data model, we
figure this out based on a clean database structure.

The ApprovalFile is directly related to the file_data_model - so no chance that a reviewer would review the incorrect version of a file.py

Noticed that our FileType enum called "bpmn" "bpmm", hope this doesn't screw someone up.

Workflows are directly related to the data_models that create the workflow spec it needs.  So the files should always be there.  There are no more hashes, and thus no more hash errors where it can't find the files to rebuild the workflow.py

Not much to report here, other than I broke every single test in the system at one point.  So I'm super concerned about this, and will be testing it a lot before creating the pull request.
2020-05-28 20:03:50 -04:00
Aaron Louie dedec02d48 Updates RRT workflow spec files 2020-05-28 10:43:03 -04:00
Carlos Lopez 41b26e28bd Merge branch 'dev' into feature/approval_request_script 2020-05-28 08:11:31 -06:00
Dan Funk cd7f67ab48 A major refactor of how we search and store files, as there was a lot of confusing bits in here.
From an API point of view you can do the following (and only the following)

/files?workflow_spec_id=x
* You can find all files associated with a workflow_spec_id, and add a file with a workflow_spec_id
/files?workflow_id=x
* You can find all files associated with a workflow_id, and add a file that is directly associated with the workflow
/files?workflow_id=x&form_field_key=y
* You can find all files associated with a form element on a running workflow, and add a new file.
   Note: you can add multiple files to the same form_field_key, IF they have different file names. If the same name, the original file is archived,
   and the new file takes its place.

The study endpoints always return a list of the file metadata associated with the study.  Removed /studies-files, but there is an
endpoint called

/studies/all  - that returns all the studies in the system, and does include their files.

On a deeper level:
 The File model no longer contains:
  - study_id,
  - task_id,
  - form_field_key

Instead, if the file is associated with workflow - then that is the one way it is connected to the study, and we use this relationship to find files for a study.
A file is never associated with a task_id, as these change when the workflow is reloaded.
The form_field_key must match the irb_doc_code, so when requesting files for a form field, we just look up the irb_doc_code.
2020-05-28 08:27:26 -04:00
Aaron Louie 97cdbfce94 Deletes extra line break 2020-05-27 23:48:48 -04:00
Dan Funk 77f72e408f Lookup Service now raises exact matches to the top. Very hackish, but it works. 2020-05-27 14:36:10 -04:00
Carlos Lopez 54640988a7 Update endpoint fixes 2020-05-27 12:06:32 -06:00