Dan Funk
f4342fc785
It became impossible to use the Swagger ui when we started adding authentication to all of the calls. I discovered Connexion and Swagger have a default way of handing JTW authentication and this cleans up our code quite a bit, moves the securing of endpoints into the API Definition, which is quite nice, and removes a whole library dependency (I never get to do that!) I added a SWAGGER_AUTH_KEY that can be used in non-production environments to allow users to quickly authenticate from the Swagger ui. I also removed all api calls to simple little happy api services, because that is just mean and pointless.
2020-03-24 14:15:21 -04:00
Aaron Louie
f9dbbefe89
Adds status spec to study when workflow is added.
2020-03-16 08:05:30 -04:00
Aaron Louie
bdd07685c6
Adds status spec when adding a study, and adds/removes workflows from study based on output data from status spec.
2020-03-15 15:54:13 -04:00
Aaron Louie
3262833102
Requires login
2020-03-11 15:27:22 -04:00
Dan Funk
e91d7aff2f
Fixes #11 : adding a delete endpoint for studies. It won't delete studies that have workflows, you have to delete those first)
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Removing the "default" error response from the api.yml, it was all noise.
2020-03-09 15:12:40 -04:00
Aaron Louie
c928a6472c
Edits typo
2020-03-06 10:57:24 -05:00
Aaron Louie
acad0023d2
Fixes a bug in get_study_workflows and adds a test covering it
2020-03-06 10:52:41 -05:00
Dan Funk
9fcd6f38f4
Merge remote-tracking branch 'origin/master' into feature/pb_services
2020-03-05 17:13:41 -05:00
Aaron Louie
e07ad8d21c
Updates training session BPMN files. Fixes PB status enums.
2020-03-05 14:21:03 -05:00
Dan Funk
70611e2c1d
Adding the version of the specification used to create a workflow to the workflow api endpoint. Though the exact content of this version is likely to change.
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Split the API specific models out from the workflow models to help me keep this straight.
Added tests to help me understand the errors thrown the and resolution path when a workflow specification changes in the midst of a running workflow.
2020-03-05 11:18:20 -05:00
Aaron Louie
f258090a0b
Fixes broken unit test
2020-03-04 09:54:00 -05:00
Aaron Louie
8cbd6f892f
WIP: Mocks study details PB endpoint response
2020-03-03 20:56:46 -05:00
Aaron Louie
01720a8bbf
Replaces migration and fixes broken tests
2020-03-03 16:02:01 -05:00
Dan Funk
d184ccc8de
Merge pull request #16 from sartography/feature/pb_services
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Feature/pb services
2020-03-03 15:38:38 -05:00
Dan Funk
7194d7d374
Standardizing the script tasks that can be executed on the server, adding tons of error messages for when things go wrong. All scripts must exist in side of the crc/scripts directory.
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Adding a new script that script tasks can use to add in data about the study.
Moving all the test workflow specifications out of the main load.
fixing a pile of tests so they can find workflow specs that are now moved into the test directory.
2020-03-03 13:52:45 -05:00
Aaron Louie
b965276310
Adds a mock study with same ID a one from data loader.
2020-03-02 15:01:41 -05:00
Aaron Louie
305118e90e
Adds a test for get_studies endpoint
2020-03-02 14:42:30 -05:00
Aaron Louie
4534b0c2df
Updates study model to better match Protocol Builder. Deletes all migrations and starts over, since Alembic has problems migrating changes to existing column constraints.
2020-02-28 11:14:30 -05:00
Aaron Louie
0cc59d0974
Adds study inactive flag. Sets study to inactive if not found in Protocol Builder.
2020-02-27 11:17:58 -05:00
Aaron Louie
f3068e68db
Adds user to example data. Requires login before adding/updating a study.
2020-02-27 10:30:16 -05:00
Aaron Louie
27d7afb656
Adds Protocol Builder models and schemas. Reorganizes and cleans up some files.
2020-02-27 09:54:46 -05:00
Dan Funk
2cc6010c8d
Protocol builder connections
2020-02-20 13:30:04 -05:00
