Aaron Louie
3262833102
Requires login
2020-03-11 15:27:22 -04:00
Dan Funk
e91d7aff2f
Fixes #11 : adding a delete endpoint for studies. It won't delete studies that have workflows, you have to delete those first)
...
Removing the "default" error response from the api.yml, it was all noise.
2020-03-09 15:12:40 -04:00
Aaron Louie
acad0023d2
Fixes a bug in get_study_workflows and adds a test covering it
2020-03-06 10:52:41 -05:00
Dan Funk
9fcd6f38f4
Merge remote-tracking branch 'origin/master' into feature/pb_services
2020-03-05 17:13:41 -05:00
Dan Funk
70611e2c1d
Adding the version of the specification used to create a workflow to the workflow api endpoint. Though the exact content of this version is likely to change.
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Split the API specific models out from the workflow models to help me keep this straight.
Added tests to help me understand the errors thrown the and resolution path when a workflow specification changes in the midst of a running workflow.
2020-03-05 11:18:20 -05:00
Aaron Louie
f258090a0b
Fixes broken unit test
2020-03-04 09:54:00 -05:00
Aaron Louie
8cbd6f892f
WIP: Mocks study details PB endpoint response
2020-03-03 20:56:46 -05:00
Aaron Louie
01720a8bbf
Replaces migration and fixes broken tests
2020-03-03 16:02:01 -05:00
Aaron Louie
668de6c4dc
Edits Protocol Builder statuses
2020-03-03 15:46:20 -05:00
Aaron Louie
4534b0c2df
Updates study model to better match Protocol Builder. Deletes all migrations and starts over, since Alembic has problems migrating changes to existing column constraints.
2020-02-28 11:14:30 -05:00
Aaron Louie
0cc59d0974
Adds study inactive flag. Sets study to inactive if not found in Protocol Builder.
2020-02-27 11:17:58 -05:00
Aaron Louie
f3068e68db
Adds user to example data. Requires login before adding/updating a study.
2020-02-27 10:30:16 -05:00
Aaron Louie
27d7afb656
Adds Protocol Builder models and schemas. Reorganizes and cleans up some files.
2020-02-27 09:54:46 -05:00
Aaron Louie
3ef4860391
Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database
2020-02-26 18:06:51 -05:00
Aaron Louie
443d38a9a1
Prevents duplication of study on update.
2020-02-21 11:24:51 -05:00
Dan Funk
2cc6010c8d
Protocol builder connections
2020-02-20 13:30:04 -05:00
Dan Funk
1d24ebe382
Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level.
2020-02-10 16:19:23 -05:00
Dan Funk
9bd93748be
Returning better cleaner information about workflow with the workflow endpoint. Removes the get_all_tasks and get_user_tasks endpoints as tasks are returned with the workflow. Workflow endpoint also includes the last task and next_task, which may or may not be user tasks. The task "type" returned is now the class name of the task_spec, rather than just the word "task".
2020-02-07 11:34:44 -05:00
Dan Funk
3fb831bae4
When you create a study, all possible workflows are then associated with that study.
2020-01-30 09:11:17 -05:00
Aaron Louie
a3b6e4fc7f
Fixes import paths
2020-01-24 11:52:52 -05:00
Aaron Louie
50dfa561a9
Fixes import paths, which were screwing up stuff.
2020-01-24 09:29:50 -05:00
Aaron Louie
fe15799ee1
Adds type hinting to db and session to fix Pycharm autocomplete. Replaces db.session with session.
2020-01-14 11:45:12 -05:00
Aaron Louie
e75da611ca
Adds endpoints for creating and updating a Study.
2020-01-03 11:44:24 -05:00
Dan Funk
c4cbaeb64e
Refactor models into seperate directories
2019-12-31 16:32:47 -05:00
Dan Funk
fb465531ca
Add the ability to delete a workflow.
2019-12-30 13:15:39 -05:00
Dan Funk
91a91e9677
Read workflow configuration from the database, and not from a file.
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And dropping the API call in the Fact Service so we aren't hitting external apis for the time being.
2019-12-30 11:07:26 -05:00
Dan Funk
0b71833946
Adding file management. Files are stored in the database along with basic meta data.
2019-12-27 13:50:03 -05:00
