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1026 Commits

Author SHA1 Message Date
mike cullerton
68820c67cb Removed (almost) all references to WorkflowSpecDependencyFile 
(There is still a call in the lookup service, but we need to decide how to fix that)
 2022-01-19 16:12:54 -05:00
mike cullerton
16a9a18c5b Fixed get reference file info, and added test 2022-01-19 15:17:35 -05:00
mike cullerton
091d71eb0f Cleaned up code around differences between file info and file data 
Cleaned up some api code around differences between file, spec_file, and reference_file
Cleaned up some api code around differences between file info and file data
Fixed some tests for file api
 2022-01-19 13:47:14 -05:00
mike cullerton
68ac056457 Merge branch 'dev' into files-to-filesystem-572 2022-01-18 08:18:14 -05:00
mike cullerton
6da6e05171 *** WIP *** 
code for updating spec files
some cleanup

tests pass, but we don't have all the tests we need.
 2022-01-13 15:24:29 -05:00
mike cullerton
7e5f2a7d6a We no longer use versioning for spec files 2022-01-12 15:09:03 -05:00
mike cullerton
ca58b0d2d2 added TODO comments 2022-01-12 15:08:34 -05:00
mike cullerton
88a8c96bd6 The reference document is already created in load_example_data 
This lead to a failing test after cleaning up the way we add/update files
 2022-01-12 15:07:57 -05:00
mike cullerton
b99ed73951 Remove unused imports 2022-01-12 15:00:26 -05:00
mike cullerton
cfa9f00bf3 *** WIP *** 
Moved reference files to their own service
 2022-01-12 14:37:33 -05:00
mike cullerton
b0cf11c8c0 We won't do workflow sync this way anymore. 
We need to add code for the new way.
These tests fail, so commenting for now, in case some of it is useful.
 2022-01-12 13:17:52 -05:00
mike cullerton
b6b9482a64 *** WIP *** 
Incremental commit. Mainly cleaning up failing tests.
 2022-01-12 13:16:09 -05:00
Dan
d346589e07 1. added the ability to filter on level and user. 
2. added a total to the response, so you can see what the total count of users is.
3. adding user_uid to the task_log table.
 2022-01-12 08:58:50 -05:00
mike cullerton
4b2319b0da *** WIP *** 
Removing debug print statements
 2022-01-11 15:55:58 -05:00
mike cullerton
4df2ed6ce4 *** WIP *** 
Failing tests, and missing functionality.
Committing to get stuff on Github.
 2022-01-11 15:30:22 -05:00
Dan
962d05c875 1. Created a TaskLoggingService to encapsulate what we are doing with Task Logging through BPMN Script calls and API calls from the front end. 
2. Added two api endpoints that will allow us to get all the logs for a specific workflow or study.
3. Assured that requests for logs are paginated, sortable, and can be limited to a specific code if needed.
4. Assure that we only use logging levels that match the log levels of Python.
 2022-01-10 13:16:54 -05:00
mike cullerton
f537fd7fbf *** WIP *** 2022-01-07 15:58:23 -05:00
mike cullerton
dc27f795c8 *** WIP *** 
Committing because it is Friday afternoon, and my computer is acting flaky
 2022-01-07 15:34:51 -05:00
mike cullerton
86a6039dc8 *** WIP *** 
**Many** tests are failing!

Committing so I can merge dev into this branch
 2022-01-06 11:46:54 -05:00
mike cullerton
2cd0f84a47 Merge branch 'dev' into files-to-filesystem-572 2022-01-03 08:06:17 -05:00
Dan
212be423f7 bumping spiffworkflow to support transcations and cancels properly. 2021-12-30 13:01:38 -05:00
Dan
3480e1c8ab use a signal, in addition to firing off a cancel notify when a workflow is restarted. 2021-12-23 15:30:09 -05:00
Dan
c83b047881 Fixing some bugs I introduced with the latest fix. 2021-12-21 16:22:41 -05:00
Dan
e715980bca bumping SpiffWorkflow to account for an issue when dealing with a subprocess immediately before a looping back to a previous task. 2021-12-21 15:01:07 -05:00
Dan
f129509802 Looks like reording the deletes allows us to remove workflow specs a little easier. Tested this with libraries, and seems to work ok. 2021-12-20 14:36:45 -05:00
mike cullerton
5c90ce01a6 *** WIP *** 
Temp services `ToFilesystemService` and `FromFilesystemService` for migrating files To and From the filesystem - Not sure where these classes will end up
Tests to call the two services.
upgrade method in migration that writes workflow spec files and metadata to filesystem
 2021-12-16 14:22:37 -05:00
mike cullerton
338352017b *** WIP *** 
Moving files to the filesystem
Tools for reading/writing metadata for categories and specs
 2021-12-16 08:41:49 -05:00
Dan
421e4fd9aa Fixes related to resent commit to SpiffWorkflow that provides better handling for workflows that loop back on themselves. 2021-12-15 16:00:31 -05:00
Dan
c46800171d Merge remote-tracking branch 'origin/dev' into bug/fix-task-data 2021-12-13 13:18:00 -05:00
mike cullerton
acbb8898e4 Merge branch 'more-study-statuses-562' into waiting-workflow-errors-566 2021-12-10 16:52:07 -05:00
mike cullerton
daef419993 Tests and workflow for the changes 2021-12-10 16:18:05 -05:00
mike cullerton
4d832891c9 Set progress_status for new studies in BaseTest 2021-12-10 16:17:23 -05:00
mike cullerton
61975093f9 Renamed some files to include the word progress 2021-12-10 15:47:34 -05:00
alicia pritchett
cacd57ce6f fix this bpmn 2021-12-10 12:31:35 -05:00
alicia pritchett
0e28d2c5f5 Fix a test 2021-12-10 12:16:39 -05:00
mike cullerton
52baf25459 In WorkflowService.do_waiting, if a workflow causes an exception, change its status from waiting to erroring so we don't continue to call it in do_waiting. 2021-12-09 15:33:39 -05:00
mike cullerton
49ba36c95e Use one of the new statuses in the test. 
Fix bug in validation test
 2021-12-09 13:33:20 -05:00
Dan Funk
23fa28bc23
Merge pull request #434 from sartography/bug/ldap_service_rollback_expoded_the_world 
The LDAP service didn't do a good enough check to see if the record w…
 2021-12-09 06:42:02 -05:00
Dan
412290f2ab The LDAP service didn't do a good enough check to see if the record was already in the database. This caused an error, which left the workflow in a waiting state. And that waiting state meant the error would just happen a million times over again until we pushed up this code change. 2021-12-09 06:33:30 -05:00
Dan Funk
0cfa59bfea
Merge pull request #429 from sartography/chore/clear-form-data-553 
Fixes #553 - Don't load Form data
 2021-12-08 10:37:44 -05:00
Dan Funk
b28ddef842
Merge pull request #430 from sartography/study-status-scripts-556 
Study status scripts #556
 2021-12-08 10:36:53 -05:00
Dan
ffafc1674a assure we don't overwrite task data with a previous form submission if that data already exists. 2021-12-07 17:04:20 -05:00
mike cullerton
4ea3682dd6 Updated for new ProtocolBuilderCreatorStudy model and schema 
Removed unused imports
 2021-12-06 14:43:07 -05:00
mike cullerton
9785a2fe5a Updated for new ProtocolBuilderCreatorStudy model and schema 
Added with `session.no_autoflush` to stop rollback during test
 2021-12-06 14:42:34 -05:00
mike cullerton
d08b2a8562 Updated for new ProtocolBuilderCreatorStudy model and schema 
Removed unused imports
 2021-12-06 14:40:56 -05:00
mike cullerton
d0ddc7a00f Updated to match new UVA API endpoint 2021-12-06 14:39:49 -05:00
alicia pritchett
22320efad4 test for this ticket 2021-12-03 12:23:57 -05:00
mike cullerton
7ca7de177e Removed print statements 2021-12-03 11:55:35 -05:00
mike cullerton
fa61aa0354 Tests for set_study_status 2021-12-03 11:45:39 -05:00
mike cullerton
1ed76bf534 test for get_study_status 2021-12-02 15:31:14 -05:00