5c5c2a7312
Assure that new lines entered in text-fields are correctly added to the final word document.
2020-05-18 11:55:10 -04:00
fc080ce7a8
Don't reset the token to something that already has a token. Terrible things happen and we hit a recursion.
2020-05-17 13:29:36 -04:00
fafdf56ad2
Merge remote-tracking branch 'origin/testing' into feature/navigation
2020-05-16 15:46:14 -04:00
43bf8f5337
Fixing a bug with navigation where elements went missing past exclusive gateways on subsequent forks.
2020-05-16 15:33:06 -04:00
091a1729f8
Removes CORS logging. Allows only specific origins
2020-05-16 11:36:48 -04:00
7d3f139633
Merge branch 'feature/navigation' of github.com:sartography/cr-connect-workflow into feature/navigation
2020-05-15 16:39:25 -04:00
de435bd961
the heck with camel case, what the heck TypeScript? Get a grip. This is a python API.
2020-05-15 16:38:37 -04:00
0f1fbd0249
Merge branch 'dev' into feature/navigation
2020-05-15 16:10:40 -04:00
53255ef35e
massive overhaul of the Workflow API endpoint.
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No Previous Task, No Last Task, No Task List. Just the current task, and the Navigation.
Use the token endpoint to set the current task, even if it is a "READY" task in the api.
Previous Task can be set by identifying the prior task in the Navigation (I'm hoping)
Prefering camel case to snake case on all new apis. Maybe clean the rest up later.
2020-05-15 15:54:53 -04:00
b63ee8159e
We now only return the ready user tasks, not all tasks, and even then the ready user tasks don't come back with the forms and details, just the bare minimum. Speeds things up considerably, and most of this information wasn't used anyway.
2020-05-14 17:13:47 -04:00
f2c9fd5fc4
adding a default url. And some debugging information to see if we hit he endpoint in the logs.
2020-05-14 15:07:05 -04:00
6d4348d644
Fixing some failing tests. Moved the task properties into a dictionary, but moving the form field properties to a dictionary will be a larger effort that we don't want to get into on either the back or front end right this moment.
2020-05-14 14:39:14 -04:00
55a1850e7c
adding a navigation component to the Workflow Model.
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running all extension/properties through the Jinja template processor so you can have custom display names using data, very helpful for building multi-instance displays.
Properties was returned as an array of key/value pairs, which is just mean. Switched this to a dictionary.
2020-05-14 13:43:23 -04:00
3ef07bd8c9
Allows all origins (for troubleshooting)
2020-05-13 12:32:57 -04:00
caf791118f
Allows all resources
2020-05-13 11:00:43 -04:00
fbdff7a5e6
Merge branch 'master' into dev
2020-05-12 22:46:20 -04:00
cdfe45dc00
Turns on flask_cors debugging to troubleshoot CORS issue
2020-05-12 22:42:02 -04:00
77b1908373
Escapes dot characters in CORS domains
2020-05-12 14:27:17 -04:00
ac3f0b401b
Converts list of allowed origins to regexes
2020-05-12 12:23:47 -04:00
e723992fde
Found a number of bugs with the parallel multi-instance - pulling in some recent changes from Spiffworkflow to open things up a bit more to allow functional jumping between tasks.
2020-05-12 12:23:43 -04:00
73ce70b574
Allows CORS connections from frontend
2020-05-12 10:43:52 -04:00
99503fb832
missed a file in the last commit.
2020-05-11 17:42:24 -04:00
b7c11fd893
Merge branch 'master' into feature/investigators_reference_file
2020-05-11 17:36:37 -04:00
02f8764056
Updated to use the latest script engine / evaluation engine that creates a single location where all values used in BPMN/DMN are processed. Right now this is a python based interpreter, but we will eventually base this on FEEL expressions.
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The validation process needs to take the api model into account so we catch errors with bad file names.
2020-05-11 17:04:05 -04:00
c34000d369
Merge branch 'master' into feature/investigators_reference_file
2020-05-07 16:47:24 -04:00
da7cae51b8
Adding a new reference file that provides greater details about the investigators related to a study.
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Improving the study_info script documentation to provide detailed examples of values returned based on arguments.
Making the tests a little more targetted and less subject to breaking through better mocks.
Allow all tests to pass even when ther protocol builder mock isn't running locally.
Removing the duplication of reference files in tests and static, as this seems silly to me at the moment.
2020-05-07 13:57:24 -04:00
9afcd753c4
No longer requires task_id
2020-05-06 14:27:28 -04:00
1571986c0e
I had to give up and live with the idea that we can only render documentation on the current task, not on the previous or next tasks. I think this is ok. If you want to view a task, you need to make it the active task to assure all the parts and pieces are in place.
2020-05-06 13:01:38 -04:00
8ded625c7d
Merge remote-tracking branch 'origin/chore/update_specs' into feature/previous_task
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# Conflicts:
# Pipfile.lock
Assuring that all documents from the xls spreadsheet are loaded when doing validations.
Fixing some failed tests.
2020-05-06 11:46:19 -04:00
07e58e923d
Merge remote-tracking branch 'origin/chore/update_specs' into feature/previous_task
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# Conflicts:
# Pipfile.lock
Assuring that all documents from the xls spreadsheet are loaded when doing validations.
2020-05-06 11:25:50 -04:00
9629b36e92
Setting JSON_SORT_KEYS to false, assuring that Flask does not resort all data returned to the front end.
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Updating Spiff Workflow which has some critical behavioral changes around MultiInstance.
2020-05-06 10:59:49 -04:00
6c36a32411
Adds DSP
2020-05-06 10:37:43 -04:00
a8827d78c4
Fixes typo
2020-05-05 20:49:07 -04:00
4ecb0cb3a3
Updates BPMN files
2020-05-05 16:15:38 -04:00
ce76b0d3e8
Merge branch 'feature/protocol_status' into feature/previous_task
2020-05-04 11:12:12 -04:00
714b5f3be0
Merge branch 'feature/protocol_status' into feature/previous_task
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# Conflicts:
# crc/services/study_service.py
2020-05-04 11:08:36 -04:00
2699f5c65c
Refactor the stats models, and assure they are very correct across all tests with the workflow api.
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I noticed we were saving the workflow every time we loaded it up, rather than only when we were making changes to it. Refactored this to be a little more careful.
Centralized the saving of the workflow into one location in the processor, so we can make sure we update all the details about that workflow every time we save.
The workflow service has a method that will log any task action taken in a consistent way.
The stats models were removed from the API completely. Will wait for a use case for dealing with this later.
2020-05-04 10:57:09 -04:00
28d5727851
Merge branch 'master' into feature/protocol_status
2020-05-01 22:55:59 -04:00
098cf10926
Fixes Jinja code to match new structure of StudyInfo documents
2020-05-01 22:49:52 -04:00
6a96ccffa2
Updates pipenv hashes. Fixes typo in SpiffWorkflow file name
2020-05-01 21:54:01 -04:00
1f5002680a
Initial work on a "Previous" task.
2020-05-01 12:11:39 -04:00
bec59a71d7
Deleteing stuff is a damn mess, but this is a little cleaner.
2020-04-29 16:07:39 -04:00
f1f8b91c9c
Refactor the document details scripts. Now there is one script, it returns data in a consistent format, and has all the details required. The script is located in StudyInfo, with the argument documents. Make note that it returns a dictionary of ALL the documents, with a field to mark which ones are required according to the protocol builder. Others may become required if a workflow determines such, in which case the workflow will enforce this, and the document will have a count > 0, and additional details in a list of files within the document. I modified the XLS file to use lower case variable names, because it disturbed me, and we have to reference them frequently. Removed devious "as_object" variable on get_required_docs, so it behaves like the other methods all the time, and returns a dictionary. All the core business logic for finding the documents list now resides in the StudyService.
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Because this changes the endpoint for all existing document details, I've modified all the test and static bpmn files to use the new format.
Shorting up the SponsorsList.xls file makes for slightly faster tests. seems senseless to load 5000 everytime we reset the data.
Tried to test all of this carefully in the test_study_details_documents.py test.
2020-04-29 15:08:11 -04:00
beb86f0453
Adds protocol script to study service
2020-04-29 10:21:24 -04:00
13333fb306
Adding an API endpoint that allows setting the token on the workflow to a specific task.
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Added error checking such that attempting to submit data for a task that is not in the "READY" state throws an error message.
For some reason I'm getting lots of errors in the tests as they try to hit API endpoints they were not hitting before, so adding a number of mocks to some of the study service tests.
2020-04-28 17:25:53 -04:00
0088364b1d
Merge branch 'master' of github.com:sartography/cr-connect-workflow
2020-04-28 13:48:52 -04:00
3e3a249e3c
Verifying Sub-Process works, and adding a field to expose a hint as to the sub-process in which the task occurs.
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Because the name field is now used to expose workflow/sub-process information on tasks, we can't use it to store the workflow_version, so that is now just stored on the database model. Which is much cleaner and removes a duplication.
2020-04-28 13:48:44 -04:00
663a1a00a8
Fixes file name so it matches workflow spec ID
2020-04-28 11:50:10 -04:00
9311a2502a
Fixes broken Formly expression
2020-04-28 09:25:44 -04:00
52fc3c2c2f
Removes xlsx lock file. Adds LibreOffice lock files to gitignore
2020-04-27 22:58:12 -04:00
Dan Funk
Aaron Louie