4c8ea14435
Fixed test - changed the method name
2021-05-12 14:07:54 -04:00
8f8d9d30e4
Added test for get_primary_workflow
2021-05-12 13:52:18 -04:00
67321ecd97
Test and workflow for persisting read-only data
2021-05-07 14:07:19 -04:00
4dc4e270aa
Fixed the test to also use HTTPS
2021-05-06 15:54:39 -04:00
375089e5df
test and bpmn file for new get_dashboard_url script
2021-05-06 15:32:28 -04:00
09a395fa34
Start for ticket 230 - Get Dashboard URL
2021-05-06 14:07:21 -04:00
cbd1d01203
Add URL to the study_info('documents') script
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fixes #321 - I merged in branches that fix #320 and #297
320-add-default-for-file-data-get
297-filename-in-documents
2021-05-05 11:30:08 -04:00
8f28970f92
Resolving an alembic conflict.
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Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens. This seems to be working locally.
2021-05-04 13:39:49 -04:00
8b0afa4437
Merge pull request #304 from sartography/irb-info-script-307
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Irb info script #307
2021-05-04 11:40:52 -04:00
34759a2f3d
Merge branch 'dev' into feature/performance-refactor
2021-05-04 11:30:13 -04:00
4780240103
Merge pull request #302 from sartography/320-add-default-for-file-data-get
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Add default capability to file_data_get script
2021-05-04 11:28:40 -04:00
d6054a9846
Merge branch 'dev' into 310-task-event-timezone
2021-05-04 11:21:36 -04:00
77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
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Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
576f3a661d
Removed print statement used while debugging.
2021-05-03 14:52:01 -04:00
c8446bfafd
Mock the Protocol Builder response in my test
2021-05-03 14:51:27 -04:00
9465b6408d
Test and workflow for new `get_irb_info` script
2021-05-01 15:53:43 -04:00
1bcf4ea02e
Test and mock data for new `get_irb_info` service in ProtocolBuilderService
2021-05-01 15:23:07 -04:00
a719cf4bf9
When retrieving the study, only update the status of underlying workflows if specifically requested.
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Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
7608a889fb
Add default capability to file_data_get
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script
2021-04-30 10:11:50 -04:00
2b9cee6b89
Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC
2021-04-29 10:25:28 -04:00
09d8c8bcba
added missing test for update_workflow_spec_category
2021-04-26 12:57:08 -04:00
21e95b106d
Merge pull request #295 from sartography/299-document-datastore
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Add file_data_get and file_data_set functions that can be accessed in…
2021-04-26 12:49:46 -04:00
0aa3e8f586
added missing test for add_workflow_spec_category
2021-04-26 12:41:50 -04:00
047c68b2b5
Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models
2021-04-26 12:31:22 -04:00
b73c2ff1cb
Added missing test for `get_workflow_from_workflow_spec`
2021-04-26 12:00:06 -04:00
1a44f50de6
Added `standalone` argument to fix failing test.
2021-04-26 11:21:35 -04:00
39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204
2021-04-26 10:27:32 -04:00
d3d7eeb309
Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
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Fixes #299
2021-04-26 09:41:14 -04:00
7cca559747
Fixed issue where we were passing in a workflow_api instead of a workflow when completing a form in tests.
2021-04-26 08:58:09 -04:00
c002ef1e76
Added test for new api endpoint to get all standalone workflow_specs.
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Modified test_add_new_workflow_specification to include new standalone argument
2021-04-26 08:56:21 -04:00
54ab7bd2f6
Test and workflow for launching a standalone workflow
2021-04-26 08:53:25 -04:00
a17e1bfaca
When completing a form in a test, check whether workflow is standalone.
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Do not set study_id when workflow is standalone.
*** Note the comment about passing in workflow_spec. We should be passing in a workflow, not a workflow_spec.
2021-04-26 08:50:46 -04:00
6c98e8a2f4
removed duplicate code
2021-04-26 08:47:03 -04:00
dd7c5fd1c1
Fixes #306 assure that we take the doc_code into account if passed in as an argument to the API for get_files.
2021-04-23 16:16:19 -04:00
cf051a7d4f
Merge branch 'dev' into 277-Document-pane
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# Conflicts:
# crc/api/file.py
2021-04-21 14:09:44 -04:00
ecff7d20d3
Adding a test for the new endpoint and cleaning up the API documenation
2021-04-21 14:00:19 -04:00
e2197ddab9
Changes to support the frontend data pane
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fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
277beb345f
Merge pull request #290 from sartography/auto-set-primary-bpmn-142
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Auto set primary bpmn #142
2021-04-16 13:36:02 -04:00
fdaa069886
Added test for automatically setting the primary bpmn for a workflow spec
2021-04-15 13:29:42 -04:00
8953637466
moved the minimal_bpmn method to base_test
2021-04-15 13:28:03 -04:00
2d4a68da6d
Added test for deleting files on restart.
2021-04-15 11:30:17 -04:00
69396f9888
Modified base_test restart_workflow_api to accept and pass on the new delete_files argument when restarting a workflow
2021-04-15 11:28:35 -04:00
069de83bd5
forgot to include a bpmn for the tests.
2021-04-09 09:02:43 -04:00
6427a54d74
Set the correct default value on enumerations - if it is a multi-select enum (checkbox is set) then it should return a default value of an empty array, and not a dictionary.
2021-04-09 08:40:58 -04:00
41310b6879
Allow both a keyword argument, a single argument when calling delete_file. And call it "delete_file" to be more conssitent with existing scripts.
2021-04-08 13:42:17 -04:00
611c72f431
Merge pull request #284 from sartography/delete-uploaded-file-script-283
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Delete uploaded file script #283
2021-04-08 12:42:30 -04:00
5155db89f9
Added test for deleting multiple files.
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Fixed existing tests to accommodate changes to test workflow bpmn file
2021-04-05 15:13:32 -04:00
70fbd49aab
Modified my test workflow so it works better for testing multiple file deletions
2021-04-05 15:12:14 -04:00
33cef2bd2a
Added tests for failing conditions
2021-04-05 13:19:29 -04:00
c6b1fd4e52
Fix for failing tests. Q_COMPLETE is no longer a column in the PB Mock study table.
2021-04-05 13:18:56 -04:00
61f37ff894
Changed the order of imports so I could debug a failing test
2021-04-05 13:16:43 -04:00
501487b31c
Assure we convert to box for validations as well, and test the bloodly snot out of this.
2021-04-05 12:47:50 -04:00
727aa72e18
Fix a bug from recent performance improvments - be sure that our study info script returns dicts that can be referenced immediately with dot notation, as this is a common pattern in our bpmn script tasks.
2021-04-05 11:31:06 -04:00
9317e49e65
Merge branch 'dev' into delete-uploaded-file-script-283
2021-04-05 10:40:33 -04:00
d81497f8cb
Test and workflow for new script to delete IRB documents
2021-04-05 08:55:41 -04:00
dcb4e7b736
fixing an error by taking a bit of the magic out of one of Mike's regex hinting tools. I figure the hint is still good, and a little less bittle, and all the information is already there if people need to dig.
2021-04-02 17:58:27 -04:00
3ad3a086ba
Merge branch 'dev' into 263-optimize-dashboard
2021-04-02 17:12:02 -04:00
2100f27976
fixing the api.yml file which was starting to throw errors when updating the libraries.
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Seems that sqlalchemy now has a hard time incrementing sequences, so putting in a fix for this.
Upgrading many of our libraries, to avoid any disconnects as we try to handle security patches from these automated bumps.
2021-04-02 17:10:05 -04:00
116bf5e7aa
Merge branch 'dev' into 263-optimize-dashboard
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# Conflicts:
# crc/services/study_service.py
2021-03-31 10:20:33 -04:00
60f5be1aef
Check in - pending change from @cullerton
2021-03-30 12:10:49 -04:00
b5d4df595f
Merge pull request #271 from sartography/master-workflow-status-messages-222
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Master workflow status messages 222
2021-03-26 20:52:24 -04:00
123ec50912
Merge pull request #272 from sartography/infinite-validations-262
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Infinite validations 262
2021-03-26 19:49:42 -04:00
ac4877fecf
Merge remote-tracking branch 'origin/dev' into master-workflow-status-messages-222
2021-03-26 17:47:57 -04:00
3ee8109535
Tests for the changes to master workflow status dictionary
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Test for each valid WorkflowState
Test for all three failure states; not in status, not a dictionary, not a valid state.
2021-03-22 17:52:14 -04:00
47ff29e3ab
Added a test for dictionary output from a decision table.
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Will need dictionary output for master workflow status messages.
2021-03-18 12:25:27 -04:00
c4b52f85af
Test and workflow for testing infinite loop code.
2021-03-17 14:52:50 -04:00
70efdb4788
The `do_task_validate_only` method in the `get_study_associates` script now returns a mocked list of associates.
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It used to return `True`, and this caused shield validation to fail when looping over the results of `get_study_associates`.
(You can't loop over a boolean)
Added a for loop in `study_sponsors_associate.bpmn` to test for this.
Moved `BaseTest` import to the top of `test_study_associate_script` because debug was failing.
2021-03-16 08:57:30 -04:00
14386b8ba9
Merge pull request #264 from sartography/bug/243_complete_all
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Bug/243 complete all
2021-03-14 12:34:55 -04:00
6f80d816cd
My privous efforts didn't take into account the fact that we use dot notation in field names.
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I've re-worked the workflow form endpoint, so that it only accepts the data that should be in the form, and ignores any other values that come back from the front end. It seems Formly has some bugs that were introducing confusing information, and I want everything to behave consistently.
I had to re-work some of the tests, which were relying on an ability to set data through a form post without having a corresponding form to do so.
2021-03-14 12:20:39 -04:00
15c64c862e
Adding an argument to update task that will allow it to complete all remaining tasks through an "update_all" flag,
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this will allow us to remove some fairly complex logic from the front end that isn't behaving properly.
2021-03-12 20:41:07 -05:00
e7c78c8d0e
Merge branch 'dev' into study-associated-email-207-223
2021-03-11 12:38:47 -05:00
b403a3015e
Modified existing tests to work with changes to the email script.
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Added test for associated emails.
Added test for cc argument.
2021-03-11 11:40:46 -05:00
8bda9889b1
Added a test for the send_email endpoint.
2021-03-11 11:38:34 -05:00
fa028dd517
Modified the email_script workflow to accommodate the changes to the email script.
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Workflow now uses keyword arguments; subject, recipients, and cc.
If cc is not passed in, we set it to None.
2021-03-11 11:37:54 -05:00
78ae719b97
Moved this test to the test_email_script test file.
2021-03-11 11:35:08 -05:00
fa4707811e
Removed the test and templates from the unused mails service.
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Mails was removed in previous commit.
2021-03-11 11:34:24 -05:00
eaf52a21ca
Merge pull request #260 from sartography/bug/delete_study
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Allows us to delete a study even if there are emails, and associated …
2021-03-09 13:51:25 -05:00
80ff8a6212
Allows us to delete a study even if there are emails, and associated study users connected to that study.
2021-03-09 13:31:26 -05:00
576aebab19
Sometimes a workflow can be completely broken and unloadable. For instance, it starts off with a engine step / script task that will not execute. So the failure happens the second it is processed. When calling reset on a workflow, we should catch the failure, and reset the workflow, so we aren't trapped in an unrecoverable state.
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To do so, I changed the WorkflowProcessor's reset method to be static, it will try to instantiate the current workflow and execute a cancel_notify event, but if that fails, it will continue and always return a new workflow processor using the latest spec.
2021-03-09 11:52:55 -05:00
7749f3aeaf
Fixed existing workflows to work with keyword arguments
2021-03-09 06:50:58 -05:00
8c75217042
Test and workflow for associated user emails
2021-03-09 06:50:20 -05:00
36dcc58705
Merge branch 'dev' of github.com:sartography/cr-connect-workflow into dev
2021-03-08 14:00:14 -05:00
291216e081
Fixing a bug that prevented proper evaluation of a enum field where the default value was null or empty.
2021-03-08 14:00:03 -05:00
f883eb2bbe
We now include field.id in the ApiError message for hidden and default validation. (The field must have a default value or value expression)
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While working on this ticket I found a logic error in the test. I expected both default_value and value_expression. It turns out the default_value is always there, it's just null if we don't set it.
Modified the existing test for hidden and required, and added tests to make sure my passing logic is now correct.
2021-03-04 10:42:13 -05:00
9e758c57d3
Merge branch 'dev' into bug/225_enum_lookup_same_field_name
2021-03-02 14:15:58 -05:00
ecfc2ee761
a slightly better test.
2021-03-02 14:15:29 -05:00
572eb3457a
Merge pull request #252 from sartography/customer-error-messages-192
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Customer error messages 192
2021-03-02 13:45:38 -05:00
06dedd8a32
Add short_title to study, change update_study task to use kw arguments and add the short_title to the update_study script
2021-03-02 10:03:53 -05:00
9a2ffb98ad
Customer Error is in a place that we can try it out on testing.
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So far, there are two known errors.
- Missing condition type (Ticket 178)
- Invalid property value in extensions tab for display_name (No ticket for this error)
We now have the option of using regular expressions to pull task_id, etc. from an error to pass back to the user in the hint.
2021-03-01 16:41:55 -05:00
aac3d5c16e
Bug #255 , this requires the front end to pass in the name of the task, when doing a lookup. This will prevent a bug where we have multiple user tasks, with enum fields that set the same variable, but use different lookup tables to populate the dropbown or search feature.
2021-03-01 14:54:04 -05:00
9d804c36d5
Merge branch 'dev' into customer-error-messages-192.
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Needed some sql changes from dev
2021-03-01 10:29:10 -05:00
0b08a95e25
Add test and make sure that the API endpoint does the right thing when we switch users - checks both associated with access and associated with no access
2021-02-25 12:20:43 -05:00
1504779bba
Make sure we have all test files
2021-02-25 11:40:45 -05:00
a1814a7727
Add some additional comments - just to be clear
2021-02-25 11:40:08 -05:00
55f8825b3c
Make sure we are testing both versions of the setting functions as well as the getting functions
2021-02-25 09:14:24 -05:00
f592a8a0b0
Added a few more tests - I think I need to test one more script endpoint
2021-02-25 09:07:46 -05:00
9bd3aa8dcb
service and scripts with working test - still needs a few more tests to try out, but should work to get Mike going
2021-02-24 12:55:23 -05:00
f937ac3ce9
Getting some thoughts down for the extension property error. This might force us to use regexes for the error service.
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Committing so I can work on another branch.
2021-02-24 10:56:25 -05:00
53fa49e668
Merge pull request #243 from sartography/183-remove-study-approval-code
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Remove Approvals per ticket 183
2021-02-22 18:12:02 -05:00
e0de1d0b3b
Fixed 3 tests to reflect a change in crc.api.workflow.validate_workflow_specification.
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Added a '\n' to the error message between the actual error and our preamble.
2021-02-19 15:55:40 -05:00
mike cullerton
Kelly McDonald
Dan
Mike Cullerton