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1346 Commits

Author SHA1 Message Date
mike cullerton
db1f3ba6ab Model and schema for new StudyCreator api endpoint 
Update StudyModel to use new model
 2021-12-06 14:36:34 -05:00
Dan
5cf011f1d9 Quick fix for ldap. 2021-12-02 12:19:36 -05:00
Dan
ad93b5fae6 We were not correctly handing the possibility of there only being a waiting task (and no ready tasks). 
We also had a problem with the validator throwing a 500 when it was trying tell us it would never finish validation.
 2021-11-30 12:44:35 -05:00
Mike Cullerton
ec9d8f8a5c
Merge pull request #425 from sartography/bug/slow_ldap 
Remove wild-card from uid search, it performs very badly.  Add a bit …
 2021-11-30 11:09:42 -05:00
Mike Cullerton
8cc581611e
Merge pull request #426 from sartography/feature/performance_improvement 
Performance upgrades - study dashboard in less than 2 seconds now
 2021-11-30 11:09:28 -05:00
Dan Funk
8c30df011b
Merge pull request #427 from sartography/workflow-status-script-548 
Workflow status script #548
 2021-11-30 10:51:57 -05:00
Dan Funk
c8c8c8b244
Merge pull request #424 from sartography/xls-xlsx-issue-540 
Xls xlsx issue #540
 2021-11-30 10:50:33 -05:00
mike cullerton
0f1ccd7db5 New script to check workflow status. 
Includes test and test workflow
 2021-11-30 08:54:15 -05:00
Dan
455c1035f1 Performance upgrade to script.py - reduce the number of times we generate the augmented list of script functions for running python evals. 
Performance upgrade to study_service.py - Don't query on the whole WorkflowModel, just get the status that we need.  Saves lots of complex joins.
Performance upgrade to SpiffWorkflow - don't convert to box unless we have to do so.
 2021-11-29 17:48:05 -05:00
Dan
e5b1daa3d9 Remove wild-card from uid search, it performs very badly. Add a bit of logging so we can easily see performance in the future. 2021-11-29 11:03:14 -05:00
Dan
8ec58fd6d7 Assure better error messages when parsing word documents with jinja syntax. 
I also have a pull request into the folks that run the python docx library to improve their error messages that we depend on here.
 2021-11-23 14:38:48 -05:00
Dan
4a1285b8e0 When validating a workflow, don't run the master workflow multiple times, its a huge waste of time. 
Provide decent data when calling get_study_associate(s) scripts.
 2021-11-22 17:17:19 -05:00
Dan
5bb7dbfb19 Improve the error messages returned from jinja template processing. Try to find the actual line with an error in it. 2021-11-22 14:46:33 -05:00
Dan
12b78c1f99 Value Errors should also alert us that we can't serialize the json. 
Enum Label was depending on the options attribute not existing in some situtations, which is a bad assumption.  Rather, check for specific properties, and call back to using options as the default.
 2021-11-22 12:37:10 -05:00
Dan
4d1f4429ff Fixing a bug in enum_label that was not working when lookup up an select list from a spreadsheet. 
Assure we raise more thoughtful error messages when running getting exceptions in engine tasks.
Field Options should always be available now due to a fix in Spiffworkflow.
 2021-11-22 12:26:30 -05:00
Dan
7b02f46403 During validation, options were not being handled correctly for certain types of lookups. 2021-11-17 13:38:41 -05:00
mike cullerton
cb77db26a3 Minor edit, for clarity 2021-11-16 12:05:20 -05:00
mike cullerton
9f18484ebb Grab exception when reading older xls spreadsheet into pandas 
Renamed `xls` variable to `xlsx`, so it makes more sense
Added a hint to error_service for validation
 2021-11-16 11:54:31 -05:00
Dan Funk
8c166bd029
Merge pull request #423 from sartography/test-protocol-builder-519 
Test protocol builder #519
 2021-11-11 11:49:57 -05:00
Dan
f4f3842059 Fixing a stupid mistake. 2021-11-11 11:45:35 -05:00
Dan
197b75c6bf Quickfix - validation was failing if we had a date object in the task data, but this isn't really a problem. We now use the same JSON serializer as flask does, when doing validations, to better verify behavior with the front end. 2021-11-11 11:18:58 -05:00
mike cullerton
c7147274f0 Resolving issues from code review 2021-11-10 17:43:34 -05:00
mike cullerton
a8b7cd8bba Merge branch 'dev' into test-protocol-builder-519 2021-11-10 16:32:34 -05:00
Dan Funk
037692f42b
Merge pull request #422 from sartography/chore/group-repeating-validation-536 
Fixes #536 - Group + Repeating property validation
 2021-11-10 15:28:04 -05:00
Dan Funk
e764bf937d
Merge pull request #421 from sartography/bug/validation_of_enum_label_failing_in_sub_workflows 
Validation was failing for enum_label() expressions when called withi…
 2021-11-10 15:26:03 -05:00
Dan Funk
81f8aed68b
Merge pull request #420 from sartography/drop-tasklog-on-delete 
Delete Task log model when deleting a study
 2021-11-10 15:20:11 -05:00
Dan Funk
84f364ce37
Merge branch 'dev' into chore/view-as-382 2021-11-10 15:16:20 -05:00
alicia pritchett
accdd281fa Fixes #536 - Group + Repeating property validation 
For now, we should not allow both group and repeat properties on a field together.
 2021-11-09 13:21:44 -05:00
mike cullerton
5cf742d955 remove unused import 2021-11-09 13:07:01 -05:00
Dan
d1eae3c15a Validation was failing for enum_label() expressions when called within a sub-process. Possible (but unlikely) that this would occur outside validation. 2021-11-09 12:55:06 -05:00
alicia pritchett
aa1ba59bb1 Delete Task log model when deleting a study 
just a minor fix
 2021-11-09 10:42:47 -05:00
mike cullerton
b193f56f35 Minor cleanup for readability. 2021-11-08 10:13:07 -05:00
mike cullerton
6f09b0d7dd Added comment to _is_valid_study. 
Fixed get_required_docs. The data returned for get_required_dcs from UVA PB was *very* different than what we had.
 2021-11-05 14:37:41 -04:00
mike cullerton
d186b24de3 UVA PB returns the info in a list. We want the dictionary in the list 2021-11-05 14:26:21 -04:00
mike cullerton
271d4da5ff Merge branch 'dev' into test-protocol-builder-519 2021-11-05 10:29:20 -04:00
mike cullerton
6d548c2a74 *** WIP *** 
Committing to work on another ticket
There are TODOs in study_service
 2021-11-05 09:59:14 -04:00
Dan
9376d3deaf Don't error out trying to send an error about invalid review types. 2021-11-04 13:32:57 -04:00
Dan Funk
3a36a48b88
Merge pull request #418 from sartography/convert-timestamp-499 
Added ordered arguments to the get_localtime script #499
 2021-11-03 14:28:57 -04:00
mike cullerton
b03e596dcf One thing at a time; remove HSRNUMBER for now 2021-11-03 12:58:03 -04:00
mike cullerton
9c8ae36ba3 UVA IRB passes back Q_COMPLETE and HSRNUMBER 2021-11-03 12:40:43 -04:00
mike cullerton
7f163285c3 Test w/Alex's ID 2021-11-03 11:56:07 -04:00
mike cullerton
8be9a1968b configure logging 2021-11-03 11:21:39 -04:00
mike cullerton
50d4159168 info log didn't show up. Maybe debug? 2021-11-03 10:36:27 -04:00
mike cullerton
8b6c8f9518 Logging to troubleshoot API call 2021-11-03 10:14:11 -04:00
mike cullerton
1f9c80d70d Added ordered arguments to the get_localtime script 
Modified the workflow so the first task is a form with booleans that allows me to test all the permutations.
Modified tests to cover all the permutations for calling the script
 2021-11-03 08:36:24 -04:00
mike cullerton
47ead5ab45 Fixed validation bug. 
There is no element documentation available in the task, so we mock up the email content.
 2021-11-02 10:00:41 -04:00
Dan Funk
8a6c1e1b51
Merge pull request #416 from sartography/bug/fix-hide-518 
Fixes validation for #518
 2021-11-01 16:22:24 -04:00
Dan Funk
a4f8e39546
Merge pull request #415 from sartography/upload-file-previous-name-514 
Upload file previous name #514
 2021-11-01 15:59:57 -04:00
Dan Funk
c4f3a3ad0d
Merge pull request #413 from sartography/logging-script-513 
Logging script #513
 2021-11-01 15:41:38 -04:00
Dan Funk
fb25404a90
Merge pull request #412 from sartography/remove-content-html-512 
Remove content_html #512
 2021-11-01 15:38:46 -04:00