Dan Funk
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f4342fc785
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It became impossible to use the Swagger ui when we started adding authentication to all of the calls. I discovered Connexion and Swagger have a default way of handing JTW authentication and this cleans up our code quite a bit, moves the securing of endpoints into the API Definition, which is quite nice, and removes a whole library dependency (I never get to do that!) I added a SWAGGER_AUTH_KEY that can be used in non-production environments to allow users to quickly authenticate from the Swagger ui. I also removed all api calls to simple little happy api services, because that is just mean and pointless.
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2020-03-24 14:15:21 -04:00 |
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Dan Funk
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3eb1167b8e
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Found a few errors in the sqlalchemy file definition that was causing failures, and had some consistency problems with the IRB Categories file name. The API was bailing out because we had restricted file types to bpmn,svg,or dmn in the connexion config file, I don't restrict this anymore we have plenty of checks elsewhere. Adding xlrd as a dependency - this didn't fail till a push to production.
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2020-03-20 08:21:21 -04:00 |
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Dan Funk
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83d859fd3a
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Just merging stuff real quick.
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2020-03-18 17:03:36 -04:00 |
Aaron Louie
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3ef4860391
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Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database
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2020-02-26 18:06:51 -05:00 |
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Dan Funk
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a642593e3d
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Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly.
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2020-02-18 16:38:56 -05:00 |
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Dan Funk
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1d24ebe382
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Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level.
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2020-02-10 16:19:23 -05:00 |
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Dan Funk
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37df0bf8f4
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Converting this over to using Postgres. See the new postgres directory for a docker container to spin this up. Tests and development databases are the same, will try and get this corrected at some point.
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2020-02-04 14:25:17 -05:00 |
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Dan Funk
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27c3b66a21
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ReadTheDocs initial setup and configuration.
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2020-01-07 13:40:31 -05:00 |
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Dan Funk
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9861f6baf3
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Lots and lots of random stuff as I organize code and get things to make sense.
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2019-12-18 14:02:17 -05:00 |
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Dan Funk
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e8ac73888b
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Creating a dependency on the SpiffWorkflow fork we created. and placing the command line script into this code base and demonstrating that our workflow processor works at least on that level. Removing all kinds of garbage that had piled up before to keep this thing clean.
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2019-12-11 11:45:44 -05:00 |
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Dan Funk
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b279246e80
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Setting up tests to work correctly when verifying endpoints.
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2019-11-21 11:36:32 -05:00 |
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Dan Funk
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358860918f
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Updates to the README and removing a problematic dependency
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2019-11-20 17:00:02 -05:00 |
Aaron Louie
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4fdc2a05c8
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Fixes broken pipenv files
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2019-11-19 16:53:46 -05:00 |
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Aaron Louie
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983ffb4309
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Adds basic Flask, Connexion, and SpiffWorkflow structure
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2019-11-19 15:57:46 -05:00 |