Aaron Louie
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8611a23ad3
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Renaming to snake case for consistency
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2020-02-28 11:54:11 -05:00 |
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Aaron Louie
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f4a0c32cec
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Fixes path to testing config file
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2020-02-28 11:33:08 -05:00 |
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Aaron Louie
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dc53939eb1
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Merge remote-tracking branch 'origin/master' into feature/protocol-builder
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2020-02-28 11:17:17 -05:00 |
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Aaron Louie
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4534b0c2df
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Updates study model to better match Protocol Builder. Deletes all migrations and starts over, since Alembic has problems migrating changes to existing column constraints.
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2020-02-28 11:14:30 -05:00 |
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Aaron Louie
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0cc59d0974
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Adds study inactive flag. Sets study to inactive if not found in Protocol Builder.
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2020-02-27 11:17:58 -05:00 |
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Aaron Louie
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f3068e68db
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Adds user to example data. Requires login before adding/updating a study.
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2020-02-27 10:30:16 -05:00 |
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Aaron Louie
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27d7afb656
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Adds Protocol Builder models and schemas. Reorganizes and cleans up some files.
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2020-02-27 09:54:46 -05:00 |
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Aaron Louie
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3ef4860391
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Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database
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2020-02-26 18:06:51 -05:00 |
Dan Funk
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c6eb2d937d
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Enable autoescape security feature for processing markdown data in descriptions from the BPMN Diagrams
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2020-02-25 16:21:47 -05:00 |
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Dan Funk
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1e8a095760
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Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.
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2020-02-25 12:01:25 -05:00 |
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Aaron Louie
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002207cbca
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Adds redirect URL to login handler
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2020-02-24 16:59:16 -05:00 |
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Aaron Louie
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443d38a9a1
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Prevents duplication of study on update.
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2020-02-21 11:24:51 -05:00 |
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Aaron Louie
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eb6354db6e
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Moves sso_backdoor parameters to query string. Prevents duplication of user on update.
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2020-02-21 11:24:39 -05:00 |
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Aaron Louie
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9f4301712e
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Merge remote-tracking branch 'origin/master'
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2020-02-20 17:23:17 -05:00 |
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Aaron Louie
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a6e0809183
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Adds SSO attributes. Prevents uid duplication errors.
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2020-02-20 17:23:10 -05:00 |
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Dan Funk
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d3c51af1f5
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Merge branch 'master' of github.com:sartography/cr-connect-workflow
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2020-02-20 16:04:44 -05:00 |
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Dan Funk
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af35f182f6
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Random Fact updated with a markdown set of examples
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2020-02-20 16:04:38 -05:00 |
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Aaron Louie
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0cda7c66e5
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Merge remote-tracking branch 'origin/master'
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2020-02-20 15:43:34 -05:00 |
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Aaron Louie
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581434b453
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Adds SSO header attributes
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2020-02-20 15:43:29 -05:00 |
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Dan Funk
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a94596112d
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Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.
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2020-02-20 14:35:21 -05:00 |
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Dan Funk
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2cc6010c8d
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Protocol builder connections
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2020-02-20 13:30:04 -05:00 |
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Dan Funk
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1a9b5b50e5
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Merge branch 'master' of github.com:sartography/cr-connect-workflow
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2020-02-18 16:39:11 -05:00 |
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Dan Funk
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a642593e3d
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Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly.
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2020-02-18 16:38:56 -05:00 |
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Aaron Louie
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6075a32d07
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Edits default value
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2020-02-18 10:17:14 -05:00 |
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Aaron Louie
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16db1e3504
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Adds default_value to Task schema
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2020-02-18 10:14:03 -05:00 |
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Aaron Louie
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5a53ddb88c
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Fixes vulnerability identified by SonarCloud
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2020-02-12 11:07:01 -05:00 |
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Aaron Louie
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5f461d9e87
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Fixes FactService
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2020-02-11 22:13:46 -05:00 |
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Aaron Louie
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b0b1a6e5e8
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Saves form field key
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2020-02-11 15:03:25 -05:00 |
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Aaron Louie
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0a3a932c50
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Comments out study workflow for now. Fixes failing unit tests.
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2020-02-11 13:40:14 -05:00 |
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Aaron Louie
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0ef1a178ed
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Merge branch 'master' into feature/crc_demo_workflows
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2020-02-11 13:30:57 -05:00 |
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Aaron Louie
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f58ed5b6ee
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Adds another user task at the end
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2020-02-11 12:14:10 -05:00 |
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Dan Funk
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709bae76b2
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Removing a rogue comma that was causing havoc. Also, don't fail if a mock already exists in the test database.
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2020-02-11 11:11:21 -05:00 |
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Dan Funk
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879a248002
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Adding a test to assure the file creation occurs as expected via the API.
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2020-02-10 20:54:22 -05:00 |
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Aaron Louie
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359fb4a2f3
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Adds draft demo workflow specs
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2020-02-10 17:19:11 -05:00 |
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Aaron Louie
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f128e7206b
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Adds placeholder scripts for testing
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2020-02-10 17:18:51 -05:00 |
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Dan Funk
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9f0eb8477a
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Fix for a bug in the File service where it was being overly restrictive.
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2020-02-10 16:27:57 -05:00 |
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Dan Funk
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1d24ebe382
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Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level.
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2020-02-10 16:19:23 -05:00 |
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Aaron Louie
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fd9c685979
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Handles processes with multiple top-level elements
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2020-02-10 15:20:45 -05:00 |
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Aaron Louie
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f142d02a30
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Adds workflow_spec_id back in to WorkflowApi
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2020-02-07 12:36:08 -05:00 |
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Dan Funk
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eae6c8dd1a
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update to last commit, left an extra column on workflow model that does not need to exist.
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2020-02-07 11:57:48 -05:00 |
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Dan Funk
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e1148e1b3d
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Merge branch 'master' of github.com:sartography/cr-connect-workflow
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2020-02-07 11:34:57 -05:00 |
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Dan Funk
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9bd93748be
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Returning better cleaner information about workflow with the workflow endpoint. Removes the get_all_tasks and get_user_tasks endpoints as tasks are returned with the workflow. Workflow endpoint also includes the last task and next_task, which may or may not be user tasks. The task "type" returned is now the class name of the task_spec, rather than just the word "task".
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2020-02-07 11:34:44 -05:00 |
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Aaron Louie
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9fb3a96a50
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Fixes instance path
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2020-02-06 14:36:02 -05:00 |
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Aaron Louie
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71dac70e1f
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Updates list of allowed files. Removes unnecessary migrations. Note this will require a full wipe & reset of the database to work.
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2020-02-05 17:23:37 -05:00 |
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Aaron Louie
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5a6d589e6d
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Adds form_field_key to API
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2020-02-05 15:06:19 -05:00 |
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Aaron Louie
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58982ab306
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Merge remote-tracking branch 'origin/feature/update-task-data' into feature/update-task-data
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2020-02-05 14:55:59 -05:00 |
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Aaron Louie
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933a235471
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Adds multiple and single file upload form controls
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2020-02-05 14:55:52 -05:00 |
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Aaron Louie
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654f39e7fd
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Adds form field key to file model.
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2020-02-05 14:55:31 -05:00 |
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Dan Funk
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ff63978da0
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read the instance/config.py file in IF it exists.
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2020-02-05 13:43:59 -05:00 |
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Aaron Louie
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e1e866a2b3
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Gets docker-compose working.
You'll need to add a .env file to the same directory as the docker-compose.yml file that sets the values for DB_USER and DB_PASS.
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2020-02-04 21:42:09 -05:00 |