Commit Graph

859 Commits

Author SHA1 Message Date
mike cullerton 3f44c202ca Merge branch '417-hsr-open-to-enrollment-bug' into 426-remove-hsr-number 2021-08-16 12:55:24 -04:00
nilez 0a232dace6 assertEquals -> assertEqual 2021-08-16 10:25:41 -04:00
nilez b9d4f6c436 assertEquals -> assertEqual 2021-08-16 10:18:29 -04:00
nilez f8dd4c3eb9 Check Study Associates Endpoint 2021-08-16 09:32:02 -04:00
mike cullerton febcb1ac5b Clarified my comments 2021-08-13 12:36:43 -04:00
mike cullerton 58119c8969 Modified `test_get_all_studies` so they don't fail looking for studies that are open for enrollment
We will soon have a new way to automatically set study status to `Open for Enrollment`, so I left the failing tests there and commented them out for now.
2021-08-13 12:32:11 -04:00
nilez e32c1db4c8 Merge remote-tracking branch 'origin/dev' into bug/missing_pi_name_246
# Conflicts:
#	crc/models/study.py
#	crc/services/study_service.py
#	crc/services/workflow_service.py
#	tests/study/test_study_associate_script.py
2021-08-12 12:59:15 -04:00
nilez d20b68e483 Fixed Deprecation Warnings in Test Files 2021-08-12 12:33:27 -04:00
nilez 2732071585 Merge branch 'dev' into bug/missing_pi_name_246 2021-08-12 12:07:25 -04:00
Dan Funk adb1b74822
Merge pull request #352 from sartography/post-process-empty-field-408
Post process empty field #408
2021-08-12 10:53:26 -04:00
mike cullerton e0096ebc8e Test and BPMN to make sure we don't process when field is hidden, but do process when field is not hidden 2021-08-11 16:44:45 -04:00
Dan 848c2e622f Always use a schema to define what is being returned, it enforces consistency of the API and internally we can depend on well defined objects. 2021-08-10 16:16:08 -04:00
mike cullerton dce95189cb Merge branch 'dev' into dmn-from-spreadsheet-395 2021-08-10 09:39:42 -04:00
Kelly McDonald 960d302c03 Finish #367 - Make sure that we only use a primary_id if it is in the workflow that we are currently working on - otherwise it is a library and might have its own primary id. 2021-08-10 09:15:38 -04:00
mike cullerton abe258cdf1 Added example data so we can grab a workflow spec 2021-08-03 11:56:53 -04:00
Kelly McDonald 6e1fedb704 Add tests for libraries, remove an API endpoint that didn't make sense after recent changes and remove some commented out sections that were not needed after some decisions about the api endpoints were made 2021-08-03 10:02:22 -04:00
mike cullerton e8ea9776a5 Test for creating dmn from spreadsheet 2021-08-02 10:04:47 -04:00
Kelly McDonald 25319a0e6a Make changes to alembic process - fix test for new API 2021-08-02 08:59:24 -04:00
mike cullerton 097dd9f9a3 Included the failing test, with self.assertRaises
Reworded some of the comments
2021-07-28 11:22:45 -04:00
Kelly McDonald 217e61eed3 next_task returns the next available task, except when the task is completed when it returns the EndEvent -
The problem was that it was returning the first EndEvent it found, not the last one. This caused a problem when we had a CallActivity which has its own EndEvent.

Fixes #399
2021-07-27 09:19:08 -04:00
mike cullerton 2c892560ad Failing test for Call Activity End Events - Ticket 399 2021-07-26 12:12:01 -04:00
Dan Funk 25e00823a7
Merge pull request #342 from sartography/enum-file-data-375
Enum file data #375
2021-07-23 13:47:57 -04:00
mike cullerton 612ce6dc35 Better test to make sure file data works with all standard field types.
(Except maybe custom types)
2021-07-23 11:25:36 -04:00
NWalker4483 a73d1794eb Fixed Associate API Endpoint description 2021-07-22 14:09:24 -04:00
mike cullerton 6b51fc7c06 Added a test with uppercase UID
Modified the script test to expect an empty dictionary now, instead of raising an error
2021-07-22 10:47:25 -04:00
mike cullerton fa19b36279 Removed temporary print statement 2021-07-15 13:16:06 -04:00
mike cullerton 9023be66f4 added a comment to the test 2021-07-15 13:14:40 -04:00
mike cullerton 82bf25cbc6 Test that we set file data_store values correctly when using the file_data property 2021-07-15 13:10:51 -04:00
Mike Cullerton 522ca9d164
Merge pull request #340 from sartography/bug/better_errors_on_scheduled_tasks
Assure we log reasonably clear errors when executing scheduled tasks …
2021-07-12 10:13:02 -04:00
Mike Cullerton d1bf370a39
Merge pull request #339 from sartography/restrict-loaded-studies-374
Restrict loaded studies #374
2021-07-12 10:11:34 -04:00
Mike Cullerton 7070761089
Merge pull request #338 from sartography/document-spreadsheet-name-380
Document spreadsheet name #380
2021-07-12 10:11:16 -04:00
Dan f982745d32 fixing a failing test, don't assume the study and workflow ids will always be 1. 2021-07-12 10:00:39 -04:00
Dan 1916c4ff54 Assure we log reasonably clear errors when executing scheduled tasks in the background, so that sentry can pick them up and they can be addressed effectively. 2021-07-12 09:43:12 -04:00
mike cullerton 69974e89fd Added 2 simple tests for filtering by REVIEW_TYPE 2021-07-09 11:39:30 -04:00
mike cullerton 682b010f6f Added mocked study_details with an invalid REVIEW_TYPE
This is used to test StudyService.get_studies_for_user
StudyService.get_studies_for_user should now filter on REVIEW_TYPE
2021-07-09 11:38:45 -04:00
mike cullerton 445d3e5f0b Added mocked pb study_details since we now check whether a study has valid REVIEW_TYPEs 2021-07-09 10:41:46 -04:00
mike cullerton 95c710768e Fixed test to reflect adding REVIEW_TYPE to mocked study_details PB data 2021-07-09 10:40:18 -04:00
mike cullerton 841bbe73ef Added REVIEW_TYPE to the mocked PB data 2021-07-09 10:38:41 -04:00
mike cullerton f1a15ef8e9 Fix the test 2021-07-07 12:54:16 -04:00
Dan Funk 3c52453c26
Merge branch 'dev' into add-name-error-hint-8 2021-07-07 11:35:24 -04:00
Dan Funk 2ed436327f
Merge pull request #333 from sartography/check-study-script-273
Check study script #273
2021-07-07 11:28:32 -04:00
Dan 2a45f2fcda Merge branch 'dev' into add-name-error-hint-8 2021-07-07 11:24:00 -04:00
mike cullerton b0cf74fa3d Merge branch 'dev' into add-by-user-61
# Conflicts:
#	tests/files/test_files_api.py
2021-07-07 10:46:50 -04:00
mike cullerton ac19c3e3c6 Add users first 2021-07-07 10:33:30 -04:00
mike cullerton 621c11fe24 Add test for user_uid 2021-07-07 09:39:01 -04:00
Dan fb54edac1c Adding additional details to error messages, and cleaning up the cruft around these messages to keep them clear and succinct.
Most noteable is the addition of the line on which the error occurs for script tasks.  It will report the line number and pass back the content of
the line that failed.
The validator only returns the first error it encounters, as it's clear that all we ever get right now is two of the same error.
Did a lot of work between this and spiffworkflow to remove all the places where we obfuscate or drop details as we converted between workflowExceptions and APIExceptions.
Dropped the python levenshtein dependency, in favor of just rolling a simple one ourselves in Spiffworkflow.
2021-07-07 00:53:49 -04:00
Dan 1b1a994360 Refactoring Reference files to use the lookup table, rather than parsing the results directly out of the spreadsheet, or attempting to cache them.
Adding a DocumentService to clean up the FileService, and get Documents well seperated, as it seems likely be pulled out or seperated in the future, there is now a Documents api file as well, for the same reason.
Some other minor changes are just fixing white space to assure our code is linting correctly.
I removed _create_study_workflow_approvals from the base test, as we don't use approvals like this anymore.
2021-07-06 13:10:20 -04:00
mike cullerton 8145ff9025 Tests for calling the script 2021-07-02 16:14:19 -04:00
mike cullerton 2cb2874a49 Added test and json data for new check_study pb mock api endpoint 2021-07-02 15:26:39 -04:00
mike cullerton 2a43230121 Test and workflow for the new name error hint code 2021-07-01 15:39:25 -04:00
Dan 9a32fadc2f Merge branch 'dev' into 346-waiting-task-schedule
# Conflicts:
#	Pipfile.lock
#	crc/services/workflow_service.py
2021-06-30 10:14:37 -04:00
Dan Funk 48bf721b23
Merge pull request #331 from sartography/bug/356_duplicate_workflow
Bug/356 duplicate workflow
2021-06-22 17:42:24 -04:00
Dan 92ca506c8e Calls to eval no longer return the data, rather it will accept and return a key, allowing the front end to cache similar queries and not re-execute them. 2021-06-22 17:23:18 -04:00
Dan 61ad371680 Clean up the file api so we don't have a bunch of extra stuff in there. Just include the raw data from the document spraedsheet if it is available. 2021-06-22 15:08:08 -04:00
Dan 1f3febe2df Fix the panda warnings, which means we only support xlsx files now.
Include the document details when reutnring a file from the file model.
Improve the validation of file form elements.
2021-06-22 14:58:52 -04:00
Dan 0722a4bf13 Moving metrics into SpiffWorkflow so we can run the performance metrics deeply across both systems simultaniously.
Upgrading libraries.
Fixing deprication issue with Pandas and numpy.
We can only process xlsx files now, plain oldschool xls is fully removed.
2021-06-18 17:00:10 -04:00
Dan 07eb3f9ca8 Moving metrics into SpiffWorkflow so we can run the performance metrics deeply across both systems simultaniously.
Upgrading libraries.
Fixing deprication issue with Pandas and numpy.
We can only process xlsx files now, plain oldschool xls is fully removed.
2021-06-18 16:41:55 -04:00
Dan Funk 19d63e2aa2
Merge pull request #328 from sartography/restart-workflow-programmatically-347
Restart workflow programmatically #347
2021-06-17 10:36:46 -04:00
Dan a4caae8d64 when validating, we need to take every step to remove the workflows we create during the validation. 2021-06-16 14:40:20 -04:00
mike cullerton 94e730d04e Test script validation 2021-06-15 11:15:31 -04:00
mike cullerton 8db4199d73 Separate workflows for `using` the script and `validating` the script. 2021-06-15 11:15:04 -04:00
mike cullerton addf1cab5b Added tests for failing conditions 2021-06-15 10:30:18 -04:00
mike cullerton 9e20025f33 Test and workflow for reset_workflow 2021-06-15 08:37:42 -04:00
Dan 7282419174 modified the tools api to return the expression and data with the result, making it easier to cash results on the front end, This should help drastically reduce the calls to the python_eval from the front end.
The post processors for form submissions needs to take repeating sections into account, or it won't find the files it is looking for.
2021-06-11 08:27:50 -04:00
Kelly McDonald 5f722d675f Add a function that gets runs via a background scheduler to look for any workflows that are in a 'waiting' state - it runs the update waiting tasks and does do_engine_steps
We have a test for the function that runs, but an assumption was made that the scheduler module has its own unit tests and we do not need to test that.

fixes #346
2021-06-09 10:42:34 -04:00
Dan 286803d10b fixing a big stupid bug I created when merging all the code and making changes to the files. 2021-06-08 14:24:59 -04:00
Dan 50ad42d3a8 You have to mock out the protocol builder in tests that rely on it. 2021-06-08 12:36:47 -04:00
Dan 076d198fc6 fixing a failing test for study associate. 2021-06-08 12:18:16 -04:00
Dan Funk 586a0f2f1a
Merge pull request #325 from sartography/feature/file_refactor
Prefer tasks that share a parent over just the the next available tas…
2021-06-08 11:28:23 -04:00
Dan 8d79fe9d94 Fixing failing tests, and now asserting that we only perform the post_process_form if we actually have a form. 2021-06-08 11:16:10 -04:00
Dan Funk 9c4994581d
Merge pull request #324 from sartography/modify-infinite-loop-312
Modify infinite loop #312
2021-06-08 10:30:13 -04:00
Dan Funk e10b210302
Merge pull request #323 from sartography/shield-test-issue-344
Shield test issue #344
2021-06-08 08:59:58 -04:00
Dan Funk a7b208f50a
Merge pull request #322 from sartography/data-store-refactor-330
Data store refactor #330
2021-06-08 08:58:53 -04:00
Dan Funk 6937c33719
Merge pull request #319 from sartography/datastore-file-endpoints-325
Datastore file endpoints #325
2021-06-08 08:54:43 -04:00
Dan Funk 37d4e7cc79
Merge pull request #318 from sartography/340-update_study_associate_change
Add test and fix to make sure that an empty study associates list (or…
2021-06-08 08:52:44 -04:00
Dan 59f605c3df Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor. 2021-06-08 08:03:14 -04:00
mike cullerton 9dc5871848 Added mocked PB data for tests using study_info script. 2021-06-07 10:08:44 -04:00
mike cullerton 70651e2a6a Test and BPMN files for testing 2021-06-04 11:45:51 -04:00
mike cullerton 37ba46fb8f These tests now require PB Mock because of the validate_study_id changes 2021-06-03 14:30:00 -04:00
mike cullerton a2e577829a Cleanup:
- removed unused imports
- removed testing print statement
2021-06-02 10:02:26 -04:00
mike cullerton 200a5b3bf3 Updated tests for file datastore endpoint
Added test of 2 entries
2021-06-01 16:27:55 -04:00
mike cullerton ec8353aaa6 Test for new datastore file api endpoint 2021-06-01 13:51:40 -04:00
Kelly McDonald 8c04e228e9 Add test and fix to make sure that an empty study associates list (or a blank list) will effectively clear the extra study associates 2021-06-01 11:46:43 -04:00
Kelly McDonald a5d67bb245 337 partial fix
if the user calls the file_data_set function for a valid file with the key 'irb_code' and a value of a valid IRB document code, then we should set the irb code on the file.
2021-05-27 12:24:30 -04:00
Dan ef7ee284b2 Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor. 2021-05-19 16:26:16 -04:00
Dan Funk 77f7fec5d4
Merge pull request #312 from sartography/study-is-none-329
Study is none #329
2021-05-14 16:33:04 -04:00
Mike Cullerton 668e2f4e3c
Merge pull request #313 from sartography/feature/add_file_data_store_properties_to_file
Assure that any data store values associated with a file come back as…
2021-05-14 16:30:35 -04:00
Dan 8e37f27399 Assure that any data store values associated with a file come back as a part of the get_study_data[documents
] endooint.
2021-05-14 15:52:25 -04:00
mike cullerton e75d933830 Make sure a standalone study does not cause an error in the /task_events api endpoint. 2021-05-14 15:35:17 -04:00
Dan Funk 4d7ce5eda9
Merge pull request #311 from sartography/deprecate-study-info-protocol-261
Deprecate study info protocol #261
2021-05-14 14:14:18 -04:00
mike cullerton 1a8c374ac0 Need to mock out these tests 2021-05-14 13:32:25 -04:00
mike cullerton a53e2db223 Final test for study_info script 2021-05-14 13:10:06 -04:00
Dan Funk ade7812540
Merge pull request #310 from sartography/get-primary-workflow-301
Get primary workflow #301
2021-05-14 12:41:48 -04:00
Dan Funk 6a34fc0cde
Merge pull request #309 from sartography/persist-read-only-data-324
Persist read only data #324
2021-05-14 12:38:48 -04:00
Dan Funk 1d28d602d5
Merge pull request #308 from sartography/get-dashboard-url-230
Get dashboard url #230
2021-05-14 12:36:40 -04:00
mike cullerton b0fcb09581 Fixed test to correspond to the changes in the mock data 2021-05-14 12:35:36 -04:00
Dan Funk 99da502912
Merge branch 'dev' into 321-Markdown-Macro 2021-05-14 12:32:41 -04:00
mike cullerton 1509bf23f8 Added some detail to the study_details mock data 2021-05-14 12:26:54 -04:00
mike cullerton 3e756dd501 Added two more test for the study_info script 2021-05-14 12:26:20 -04:00
mike cullerton 885c4c9a20 Started writing tests for the study_info script.
Need to add some mock data for a couple more
2021-05-13 16:30:17 -04:00
mike cullerton 4c8ea14435 Fixed test - changed the method name 2021-05-12 14:07:54 -04:00
mike cullerton 8f8d9d30e4 Added test for get_primary_workflow 2021-05-12 13:52:18 -04:00
mike cullerton 67321ecd97 Test and workflow for persisting read-only data 2021-05-07 14:07:19 -04:00
mike cullerton 4dc4e270aa Fixed the test to also use HTTPS 2021-05-06 15:54:39 -04:00
mike cullerton 375089e5df test and bpmn file for new get_dashboard_url script 2021-05-06 15:32:28 -04:00
mike cullerton 09a395fa34 Start for ticket 230 - Get Dashboard URL 2021-05-06 14:07:21 -04:00
Kelly McDonald cbd1d01203 Add URL to the study_info('documents') script
fixes #321 - I merged in branches that fix #320 and #297

320-add-default-for-file-data-get
297-filename-in-documents
2021-05-05 11:30:08 -04:00
Dan 8f28970f92 Resolving an alembic conflict.
Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens.  This seems to be working locally.
2021-05-04 13:39:49 -04:00
Dan Funk 8b0afa4437
Merge pull request #304 from sartography/irb-info-script-307
Irb info script #307
2021-05-04 11:40:52 -04:00
Dan Funk 34759a2f3d
Merge branch 'dev' into feature/performance-refactor 2021-05-04 11:30:13 -04:00
Dan Funk 4780240103
Merge pull request #302 from sartography/320-add-default-for-file-data-get
Add default capability to file_data_get script
2021-05-04 11:28:40 -04:00
Dan Funk d6054a9846
Merge branch 'dev' into 310-task-event-timezone 2021-05-04 11:21:36 -04:00
Dan Funk 77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
mike cullerton 576f3a661d Removed print statement used while debugging. 2021-05-03 14:52:01 -04:00
mike cullerton c8446bfafd Mock the Protocol Builder response in my test 2021-05-03 14:51:27 -04:00
mike cullerton 9465b6408d Test and workflow for new `get_irb_info` script 2021-05-01 15:53:43 -04:00
mike cullerton 1bcf4ea02e Test and mock data for new `get_irb_info` service in ProtocolBuilderService 2021-05-01 15:23:07 -04:00
Dan a719cf4bf9 When retrieving the study, only update the status of underlying workflows if specifically requested.
Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
Kelly McDonald 7608a889fb Add default capability to file_data_get
script
2021-04-30 10:11:50 -04:00
Kelly McDonald 2b9cee6b89 Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC 2021-04-29 10:25:28 -04:00
mike cullerton 09d8c8bcba added missing test for update_workflow_spec_category 2021-04-26 12:57:08 -04:00
Dan Funk 21e95b106d
Merge pull request #295 from sartography/299-document-datastore
Add file_data_get and file_data_set functions that can be accessed in…
2021-04-26 12:49:46 -04:00
mike cullerton 0aa3e8f586 added missing test for add_workflow_spec_category 2021-04-26 12:41:50 -04:00
Dan 047c68b2b5 Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models 2021-04-26 12:31:22 -04:00
mike cullerton b73c2ff1cb Added missing test for `get_workflow_from_workflow_spec` 2021-04-26 12:00:06 -04:00
mike cullerton 1a44f50de6 Added `standalone` argument to fix failing test. 2021-04-26 11:21:35 -04:00
Mike Cullerton 39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204 2021-04-26 10:27:32 -04:00
Kelly McDonald d3d7eeb309 Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
Fixes #299
2021-04-26 09:41:14 -04:00
mike cullerton 7cca559747 Fixed issue where we were passing in a workflow_api instead of a workflow when completing a form in tests. 2021-04-26 08:58:09 -04:00
mike cullerton c002ef1e76 Added test for new api endpoint to get all standalone workflow_specs.
Modified test_add_new_workflow_specification to include new standalone argument
2021-04-26 08:56:21 -04:00
mike cullerton 54ab7bd2f6 Test and workflow for launching a standalone workflow 2021-04-26 08:53:25 -04:00
mike cullerton a17e1bfaca When completing a form in a test, check whether workflow is standalone.
Do not set study_id when workflow is standalone.

*** Note the comment about passing in workflow_spec. We should be passing in a workflow, not a workflow_spec.
2021-04-26 08:50:46 -04:00
mike cullerton 6c98e8a2f4 removed duplicate code 2021-04-26 08:47:03 -04:00
Dan dd7c5fd1c1 Fixes #306 assure that we take the doc_code into account if passed in as an argument to the API for get_files. 2021-04-23 16:16:19 -04:00
Dan cf051a7d4f Merge branch 'dev' into 277-Document-pane
# Conflicts:
#	crc/api/file.py
2021-04-21 14:09:44 -04:00
Dan ecff7d20d3 Adding a test for the new endpoint and cleaning up the API documenation 2021-04-21 14:00:19 -04:00
Kelly McDonald e2197ddab9 Changes to support the frontend data pane
fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
Dan Funk 277beb345f
Merge pull request #290 from sartography/auto-set-primary-bpmn-142
Auto set primary bpmn #142
2021-04-16 13:36:02 -04:00
mike cullerton fdaa069886 Added test for automatically setting the primary bpmn for a workflow spec 2021-04-15 13:29:42 -04:00
mike cullerton 8953637466 moved the minimal_bpmn method to base_test 2021-04-15 13:28:03 -04:00
mike cullerton 2d4a68da6d Added test for deleting files on restart. 2021-04-15 11:30:17 -04:00
mike cullerton 69396f9888 Modified base_test restart_workflow_api to accept and pass on the new delete_files argument when restarting a workflow 2021-04-15 11:28:35 -04:00
Dan 069de83bd5 forgot to include a bpmn for the tests. 2021-04-09 09:02:43 -04:00
Dan 6427a54d74 Set the correct default value on enumerations - if it is a multi-select enum (checkbox is set) then it should return a default value of an empty array, and not a dictionary. 2021-04-09 08:40:58 -04:00
Dan 41310b6879 Allow both a keyword argument, a single argument when calling delete_file. And call it "delete_file" to be more conssitent with existing scripts. 2021-04-08 13:42:17 -04:00
Dan Funk 611c72f431
Merge pull request #284 from sartography/delete-uploaded-file-script-283
Delete uploaded file script #283
2021-04-08 12:42:30 -04:00
mike cullerton 5155db89f9 Added test for deleting multiple files.
Fixed existing tests to accommodate changes to test workflow bpmn file
2021-04-05 15:13:32 -04:00
mike cullerton 70fbd49aab Modified my test workflow so it works better for testing multiple file deletions 2021-04-05 15:12:14 -04:00
mike cullerton 33cef2bd2a Added tests for failing conditions 2021-04-05 13:19:29 -04:00
mike cullerton c6b1fd4e52 Fix for failing tests. Q_COMPLETE is no longer a column in the PB Mock study table. 2021-04-05 13:18:56 -04:00
mike cullerton 61f37ff894 Changed the order of imports so I could debug a failing test 2021-04-05 13:16:43 -04:00
Dan 501487b31c Assure we convert to box for validations as well, and test the bloodly snot out of this. 2021-04-05 12:47:50 -04:00
Dan 727aa72e18 Fix a bug from recent performance improvments - be sure that our study info script returns dicts that can be referenced immediately with dot notation, as this is a common pattern in our bpmn script tasks. 2021-04-05 11:31:06 -04:00
mike cullerton 9317e49e65 Merge branch 'dev' into delete-uploaded-file-script-283 2021-04-05 10:40:33 -04:00
mike cullerton d81497f8cb Test and workflow for new script to delete IRB documents 2021-04-05 08:55:41 -04:00
Dan dcb4e7b736 fixing an error by taking a bit of the magic out of one of Mike's regex hinting tools. I figure the hint is still good, and a little less bittle, and all the information is already there if people need to dig. 2021-04-02 17:58:27 -04:00
Dan 3ad3a086ba Merge branch 'dev' into 263-optimize-dashboard 2021-04-02 17:12:02 -04:00
Dan 2100f27976 fixing the api.yml file which was starting to throw errors when updating the libraries.
Seems that sqlalchemy now has a hard time incrementing sequences, so putting in a fix for this.
Upgrading many of our libraries, to avoid any disconnects as we try to handle security patches from these automated bumps.
2021-04-02 17:10:05 -04:00
Kelly McDonald 116bf5e7aa Merge branch 'dev' into 263-optimize-dashboard
# Conflicts:
#	crc/services/study_service.py
2021-03-31 10:20:33 -04:00
Kelly McDonald 60f5be1aef Check in - pending change from @cullerton 2021-03-30 12:10:49 -04:00
Dan Funk b5d4df595f
Merge pull request #271 from sartography/master-workflow-status-messages-222
Master workflow status messages 222
2021-03-26 20:52:24 -04:00
Dan Funk 123ec50912
Merge pull request #272 from sartography/infinite-validations-262
Infinite validations 262
2021-03-26 19:49:42 -04:00
Dan ac4877fecf Merge remote-tracking branch 'origin/dev' into master-workflow-status-messages-222 2021-03-26 17:47:57 -04:00
mike cullerton 3ee8109535 Tests for the changes to master workflow status dictionary
Test for each valid WorkflowState
Test for all three failure states; not in status, not a dictionary, not a valid state.
2021-03-22 17:52:14 -04:00
mike cullerton 47ff29e3ab Added a test for dictionary output from a decision table.
Will need dictionary output for master workflow status messages.
2021-03-18 12:25:27 -04:00
mike cullerton c4b52f85af Test and workflow for testing infinite loop code. 2021-03-17 14:52:50 -04:00
mike cullerton 70efdb4788 The `do_task_validate_only` method in the `get_study_associates` script now returns a mocked list of associates.
It used to return `True`, and this caused shield validation to fail when looping over the results of `get_study_associates`.
(You can't loop over a boolean)

Added a for loop in `study_sponsors_associate.bpmn` to test for this.
Moved `BaseTest` import to the top of `test_study_associate_script` because debug was failing.
2021-03-16 08:57:30 -04:00
Dan Funk 14386b8ba9
Merge pull request #264 from sartography/bug/243_complete_all
Bug/243 complete all
2021-03-14 12:34:55 -04:00
Dan 6f80d816cd My privous efforts didn't take into account the fact that we use dot notation in field names.
I've re-worked the workflow form endpoint, so that it only accepts the data that should be in the form, and ignores any other values that come back from the front end.  It seems Formly has some bugs that were introducing confusing information, and I want everything to behave consistently.
I had to re-work some of the tests, which were relying on an ability to set data through a form post without having a corresponding form to do so.
2021-03-14 12:20:39 -04:00
Dan 15c64c862e Adding an argument to update task that will allow it to complete all remaining tasks through an "update_all" flag,
this will allow us to remove some fairly complex logic from the front end that isn't behaving properly.
2021-03-12 20:41:07 -05:00
Mike Cullerton e7c78c8d0e
Merge branch 'dev' into study-associated-email-207-223 2021-03-11 12:38:47 -05:00
mike cullerton b403a3015e Modified existing tests to work with changes to the email script.
Added test for associated emails.
Added test for cc argument.
2021-03-11 11:40:46 -05:00
mike cullerton 8bda9889b1 Added a test for the send_email endpoint. 2021-03-11 11:38:34 -05:00
mike cullerton fa028dd517 Modified the email_script workflow to accommodate the changes to the email script.
Workflow now uses keyword arguments; subject, recipients, and cc.
If cc is not passed in, we set it to None.
2021-03-11 11:37:54 -05:00
mike cullerton 78ae719b97 Moved this test to the test_email_script test file. 2021-03-11 11:35:08 -05:00
mike cullerton fa4707811e Removed the test and templates from the unused mails service.
Mails was removed in previous commit.
2021-03-11 11:34:24 -05:00
Mike Cullerton eaf52a21ca
Merge pull request #260 from sartography/bug/delete_study
Allows us to delete a study even if there are emails, and associated …
2021-03-09 13:51:25 -05:00
Dan 80ff8a6212 Allows us to delete a study even if there are emails, and associated study users connected to that study. 2021-03-09 13:31:26 -05:00
Dan 576aebab19 Sometimes a workflow can be completely broken and unloadable. For instance, it starts off with a engine step / script task that will not execute. So the failure happens the second it is processed. When calling reset on a workflow, we should catch the failure, and reset the workflow, so we aren't trapped in an unrecoverable state.
To do so, I changed the WorkflowProcessor's reset method to be static, it will try to instantiate the current workflow and execute a cancel_notify event, but if that fails, it will continue and always return a new workflow processor using the latest spec.
2021-03-09 11:52:55 -05:00
mike cullerton 7749f3aeaf Fixed existing workflows to work with keyword arguments 2021-03-09 06:50:58 -05:00
mike cullerton 8c75217042 Test and workflow for associated user emails 2021-03-09 06:50:20 -05:00
Dan 36dcc58705 Merge branch 'dev' of github.com:sartography/cr-connect-workflow into dev 2021-03-08 14:00:14 -05:00
Dan 291216e081 Fixing a bug that prevented proper evaluation of a enum field where the default value was null or empty. 2021-03-08 14:00:03 -05:00
mike cullerton f883eb2bbe We now include field.id in the ApiError message for hidden and default validation. (The field must have a default value or value expression)
While working on this ticket I found a logic error in the test. I expected both default_value and value_expression. It turns out the default_value is always there, it's just null if we don't set it.

Modified the existing test for hidden and required, and added tests to make sure my passing logic is now correct.
2021-03-04 10:42:13 -05:00
Dan 9e758c57d3 Merge branch 'dev' into bug/225_enum_lookup_same_field_name 2021-03-02 14:15:58 -05:00
Dan ecfc2ee761 a slightly better test. 2021-03-02 14:15:29 -05:00
Dan Funk 572eb3457a
Merge pull request #252 from sartography/customer-error-messages-192
Customer error messages 192
2021-03-02 13:45:38 -05:00
Kelly McDonald 06dedd8a32 Add short_title to study, change update_study task to use kw arguments and add the short_title to the update_study script 2021-03-02 10:03:53 -05:00
mike cullerton 9a2ffb98ad Customer Error is in a place that we can try it out on testing.
So far, there are two known errors.
 - Missing condition type (Ticket 178)
 - Invalid property value in extensions tab for display_name (No ticket for this error)

We now have the option of using regular expressions to pull task_id, etc. from an error to pass back to the user in the hint.
2021-03-01 16:41:55 -05:00
Dan aac3d5c16e Bug #255, this requires the front end to pass in the name of the task, when doing a lookup. This will prevent a bug where we have multiple user tasks, with enum fields that set the same variable, but use different lookup tables to populate the dropbown or search feature. 2021-03-01 14:54:04 -05:00
mike cullerton 9d804c36d5 Merge branch 'dev' into customer-error-messages-192.
Needed some sql changes from dev
2021-03-01 10:29:10 -05:00
Kelly McDonald 0b08a95e25 Add test and make sure that the API endpoint does the right thing when we switch users - checks both associated with access and associated with no access 2021-02-25 12:20:43 -05:00
Kelly McDonald 1504779bba Make sure we have all test files 2021-02-25 11:40:45 -05:00
Kelly McDonald a1814a7727 Add some additional comments - just to be clear 2021-02-25 11:40:08 -05:00
Kelly McDonald 55f8825b3c Make sure we are testing both versions of the setting functions as well as the getting functions 2021-02-25 09:14:24 -05:00
Kelly McDonald f592a8a0b0 Added a few more tests - I think I need to test one more script endpoint 2021-02-25 09:07:46 -05:00
Kelly McDonald 9bd3aa8dcb service and scripts with working test - still needs a few more tests to try out, but should work to get Mike going 2021-02-24 12:55:23 -05:00
mike cullerton f937ac3ce9 Getting some thoughts down for the extension property error. This might force us to use regexes for the error service.
Committing so I can work on another branch.
2021-02-24 10:56:25 -05:00
Dan Funk 53fa49e668
Merge pull request #243 from sartography/183-remove-study-approval-code
Remove Approvals per ticket 183
2021-02-22 18:12:02 -05:00
mike cullerton e0de1d0b3b Fixed 3 tests to reflect a change in crc.api.workflow.validate_workflow_specification.
Added a '\n' to the error message between the actual error and our preamble.
2021-02-19 15:55:40 -05:00