9785a2fe5a
Updated for new ProtocolBuilderCreatorStudy model and schema
...
Added with `session.no_autoflush` to stop rollback during test
2021-12-06 14:42:34 -05:00
d08b2a8562
Updated for new ProtocolBuilderCreatorStudy model and schema
...
Removed unused imports
2021-12-06 14:40:56 -05:00
5429e7da7d
All enumerated lists used in web forms should contain a single value, not a dictionary of value/labels.
...
Removing the spreadsheet.value.column and data.value.column so we just have value.column for both.
Improving the __str__ function in the ApiError class, to make debugging a little easier.
Adding a "validate_all" flask command, to help us track down any issues with current workflows in production (use this in concert with sync_with_testing)
Fixed logs of tests.
removed fact_runner.py, a very early and crufty bit of code.
2021-10-19 10:13:43 -04:00
fdce91507c
Improve the warning messages that come back when running the master workflow spec.
2021-10-07 14:43:38 -04:00
ea4e382f06
Fixing some tests
2021-10-06 15:24:58 -04:00
da894219c5
Changes to tests after removing `name` column from `workflow_spec` and `workflow_spec_category` tables.
2021-10-05 14:20:03 -04:00
d5d4496cd0
Admin flag on category + migration + updated test
2021-09-29 16:53:59 -04:00
e4add14193
Merge pull request #378 from sartography/bug/246_user_ldap_refactor
...
Bug/246 user ldap refactor
2021-09-22 15:31:34 -04:00
deff293fff
Merge pull request #376 from sartography/bug/468_missing_file_date
...
fixes #448 - Missing file date
2021-09-22 15:29:32 -04:00
19104303de
Refactor of the way we store and return details about users - All the details about a user, or individual associated with a study is returned within in an Ldap model. I've removed duplication between these models. This required some cleanup of the tests, and a migration that will drop the user details.
2021-09-22 13:16:25 -04:00
4b591a076f
Adding importlib-resournces as a dependency, which is suddenly failing on Travis, likely due to different versions of Python as I try to upgrade to 3.9
2021-09-21 14:36:57 -04:00
deb3d7bf67
Updated for `short_name` and `proposal_name`
...
Also cleaned up some for readability
2021-09-17 11:59:02 -04:00
444e3fa76d
Merge branch 'dev' into zip-documents-379
2021-09-14 09:39:19 -04:00
cd3d17862a
Add task_spec_name to a bunch of tests
2021-08-26 10:43:28 -04:00
35285a0b60
Fixed tests that broke from the new irb_documents spreadsheet
2021-08-26 08:51:52 -04:00
7a8eeab820
Merge branch 'dev' into bug/missing_pi_name_246
2021-08-17 11:16:03 -04:00
4e0e162fd6
Removing the execution flag Nile keeps adding to files.
2021-08-17 09:50:57 -04:00
3f44c202ca
Merge branch '417-hsr-open-to-enrollment-bug' into 426-remove-hsr-number
2021-08-16 12:55:24 -04:00
0a232dace6
assertEquals -> assertEqual
2021-08-16 10:25:41 -04:00
b9d4f6c436
assertEquals -> assertEqual
2021-08-16 10:18:29 -04:00
f8dd4c3eb9
Check Study Associates Endpoint
2021-08-16 09:32:02 -04:00
febcb1ac5b
Clarified my comments
2021-08-13 12:36:43 -04:00
58119c8969
Modified `test_get_all_studies` so they don't fail looking for studies that are open for enrollment
...
We will soon have a new way to automatically set study status to `Open for Enrollment`, so I left the failing tests there and commented them out for now.
2021-08-13 12:32:11 -04:00
e32c1db4c8
Merge remote-tracking branch 'origin/dev' into bug/missing_pi_name_246
...
# Conflicts:
# crc/models/study.py
# crc/services/study_service.py
# crc/services/workflow_service.py
# tests/study/test_study_associate_script.py
2021-08-12 12:59:15 -04:00
d20b68e483
Fixed Deprecation Warnings in Test Files
2021-08-12 12:33:27 -04:00
848c2e622f
Always use a schema to define what is being returned, it enforces consistency of the API and internally we can depend on well defined objects.
2021-08-10 16:16:08 -04:00
a73d1794eb
Fixed Associate API Endpoint description
2021-07-22 14:09:24 -04:00
69974e89fd
Added 2 simple tests for filtering by REVIEW_TYPE
2021-07-09 11:39:30 -04:00
445d3e5f0b
Added mocked pb study_details since we now check whether a study has valid REVIEW_TYPEs
2021-07-09 10:41:46 -04:00
fb54edac1c
Adding additional details to error messages, and cleaning up the cruft around these messages to keep them clear and succinct.
...
Most noteable is the addition of the line on which the error occurs for script tasks. It will report the line number and pass back the content of
the line that failed.
The validator only returns the first error it encounters, as it's clear that all we ever get right now is two of the same error.
Did a lot of work between this and spiffworkflow to remove all the places where we obfuscate or drop details as we converted between workflowExceptions and APIExceptions.
Dropped the python levenshtein dependency, in favor of just rolling a simple one ourselves in Spiffworkflow.
2021-07-07 00:53:49 -04:00
1b1a994360
Refactoring Reference files to use the lookup table, rather than parsing the results directly out of the spreadsheet, or attempting to cache them.
...
Adding a DocumentService to clean up the FileService, and get Documents well seperated, as it seems likely be pulled out or seperated in the future, there is now a Documents api file as well, for the same reason.
Some other minor changes are just fixing white space to assure our code is linting correctly.
I removed _create_study_workflow_approvals from the base test, as we don't use approvals like this anymore.
2021-07-06 13:10:20 -04:00
61ad371680
Clean up the file api so we don't have a bunch of extra stuff in there. Just include the raw data from the document spraedsheet if it is available.
2021-06-22 15:08:08 -04:00
07eb3f9ca8
Moving metrics into SpiffWorkflow so we can run the performance metrics deeply across both systems simultaniously.
...
Upgrading libraries.
Fixing deprication issue with Pandas and numpy.
We can only process xlsx files now, plain oldschool xls is fully removed.
2021-06-18 16:41:55 -04:00
9c4994581d
Merge pull request #324 from sartography/modify-infinite-loop-312
...
Modify infinite loop #312
2021-06-08 10:30:13 -04:00
37d4e7cc79
Merge pull request #318 from sartography/340-update_study_associate_change
...
Add test and fix to make sure that an empty study associates list (or…
2021-06-08 08:52:44 -04:00
9dc5871848
Added mocked PB data for tests using study_info script.
2021-06-07 10:08:44 -04:00
37ba46fb8f
These tests now require PB Mock because of the validate_study_id changes
2021-06-03 14:30:00 -04:00
8c04e228e9
Add test and fix to make sure that an empty study associates list (or a blank list) will effectively clear the extra study associates
2021-06-01 11:46:43 -04:00
a5d67bb245
337 partial fix
...
if the user calls the file_data_set function for a valid file with the key 'irb_code' and a value of a valid IRB document code, then we should set the irb code on the file.
2021-05-27 12:24:30 -04:00
8e37f27399
Assure that any data store values associated with a file come back as a part of the get_study_data[documents
...
] endooint.
2021-05-14 15:52:25 -04:00
8f28970f92
Resolving an alembic conflict.
...
Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens. This seems to be working locally.
2021-05-04 13:39:49 -04:00
d6054a9846
Merge branch 'dev' into 310-task-event-timezone
2021-05-04 11:21:36 -04:00
2b9cee6b89
Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC
2021-04-29 10:25:28 -04:00
39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204
2021-04-26 10:27:32 -04:00
7cca559747
Fixed issue where we were passing in a workflow_api instead of a workflow when completing a form in tests.
2021-04-26 08:58:09 -04:00
e2197ddab9
Changes to support the frontend data pane
...
fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
501487b31c
Assure we convert to box for validations as well, and test the bloodly snot out of this.
2021-04-05 12:47:50 -04:00
727aa72e18
Fix a bug from recent performance improvments - be sure that our study info script returns dicts that can be referenced immediately with dot notation, as this is a common pattern in our bpmn script tasks.
2021-04-05 11:31:06 -04:00
116bf5e7aa
Merge branch 'dev' into 263-optimize-dashboard
...
# Conflicts:
# crc/services/study_service.py
2021-03-31 10:20:33 -04:00
60f5be1aef
Check in - pending change from @cullerton
2021-03-30 12:10:49 -04:00
mike cullerton
Dan
alicia pritchett
nilez
Kelly McDonald
Mike Cullerton