Commit Graph

59 Commits

Author SHA1 Message Date
Mike Cullerton 98d641f54d
Merge branch 'dev' into partial_testing 2021-06-30 16:13:31 -04:00
NWalker4483 508ef1ff2b Readded exit_at to workflow param 2021-06-30 11:15:48 -04:00
Dan 9a32fadc2f Merge branch 'dev' into 346-waiting-task-schedule
# Conflicts:
#	Pipfile.lock
#	crc/services/workflow_service.py
2021-06-30 10:14:37 -04:00
Dan a79ba22410 fixes to get the tests passing. We were missing a dependency in the Pipfile and the data_store had some invalid imports. 2021-06-30 10:06:57 -04:00
Dan 0722a4bf13 Moving metrics into SpiffWorkflow so we can run the performance metrics deeply across both systems simultaniously.
Upgrading libraries.
Fixing deprication issue with Pandas and numpy.
We can only process xlsx files now, plain oldschool xls is fully removed.
2021-06-18 17:00:10 -04:00
Dan 07eb3f9ca8 Moving metrics into SpiffWorkflow so we can run the performance metrics deeply across both systems simultaniously.
Upgrading libraries.
Fixing deprication issue with Pandas and numpy.
We can only process xlsx files now, plain oldschool xls is fully removed.
2021-06-18 16:41:55 -04:00
Kelly McDonald 9f66a938f2 Update pip 2021-04-05 10:19:29 -04:00
Kelly McDonald e54a6956df Make a change in the case that we have no task_events at all. 2021-02-16 11:10:40 -05:00
Dan 86ba20b2b4 Moving back to using Spiffworkflow master. 2020-12-14 21:44:50 -05:00
Dan 93b12a8e82 updates using new navigation from spiff workflow's navigation branch, all tests passing. 2020-12-04 17:56:12 -05:00
Dan Funk ced062e4d1 dependencies. What the heck. 2020-08-12 23:19:02 -04:00
Dan Funk c572b02c5c Trying to rectify some issues with deployment and dependencies in spiffworkflow that are only failing once pushed out to production. 2020-08-12 22:00:09 -04:00
Dan Funk 84a3897b2f Bouncing Spiff version. 2020-08-12 15:37:06 -04:00
Aaron Louie 438a31c9ec Updates packages 2020-07-31 13:19:26 -04:00
Dan Funk 9112be548d Adding box as a direct dependency. Really uncertain how this is working everwhere but in the actual deployment. 2020-07-30 15:04:09 -04:00
Dan Funk 7004d9ba88 Bumping spiffworkflow version. 2020-07-30 13:56:57 -04:00
Dan Funk 9704cbcb26 Modifications to the ldap scripts to bring them back in line with what Kelly is doing with the evaluation process. 2020-07-30 13:35:20 -04:00
Dan Funk 31982f81ae Merge branch 'dev' into feature/documents_publishing
# Conflicts:
#	Pipfile.lock
2020-07-30 10:17:08 -04:00
Dan Funk 2979a4ef5b Don't use editable in the pipfile unless you are pointing to a local directory. 2020-07-27 12:08:26 -04:00
Dan Funk 06430550c8 Dropping the RRT-Data-Fix, it should have come out already, but had a failing test, so pulling it out now rather than delve into what is going wrong with obsolete code. 2020-07-20 11:39:50 -04:00
Carlos Lopez a10ef9066d Github integration with admin 2020-07-17 12:31:05 -06:00
Kelly McDonald ab5771024e Check in for sanity check 2020-07-17 09:24:53 -04:00
Dan Funk 4ff47c030c Updaing to the latest spiffworkflow, and fixing README for running tests. 2020-06-29 17:03:57 -04:00
Aaron Louie 939c9e67a8 Moves back to Spiff deploy branch 2020-06-29 12:12:52 -04:00
Dan Funk 150117587e Merge branch 'dev' into feature/parallel_multiinstance_tasks 2020-06-25 23:20:38 -04:00
Aaron Louie c3ceda4c2f Replaces xml.etree with lxml.etree 2020-06-25 14:02:16 -04:00
Aaron Louie 23941d73ad Fixes variable names. Updates Spiff to STG-26 branch. Updates package versions. 2020-06-25 11:02:57 -04:00
Carlos Lopez 5327b469f6 Merge branch 'rrt/dev' into feature/emails-enhancement 2020-06-24 21:46:53 -06:00
Carlos Lopez e947f40ec7 Merge branch 'rrt/dev' into feature/emails-enhancement 2020-06-17 20:10:11 -06:00
Carlos Lopez 896ba6b377 Email relies now on markdown content 2020-06-17 17:00:16 -06:00
Dan Funk da048d358e Merge branch 'dev' into feature/refactor_data_loading 2020-06-17 17:14:30 -04:00
Aaron Louie 64cecfba07 Installs pytest and coverage as dev dependencies 2020-06-16 15:56:09 -04:00
Carlos Lopez 4cf52b527c Adding admin dashboard 2020-06-08 07:14:31 -06:00
Carlos Lopez f581bd9f2b Mails for approval process 2020-06-04 00:35:59 -06:00
Carlos Lopez 95a3b22bf0 Enabling Sentry for boxes with the flag set 2020-06-01 19:59:55 -06:00
Dan Funk 079a0c1feb Moving spiff dependency to a deploy branch 2020-05-29 11:36:03 -04:00
Aaron Louie cb2613feee Fixes all the paths and routing errors 2020-05-24 23:09:12 -04:00
Aaron Louie b1718078ff Refactors Dockerfile again. Installs gunicorn. Don't run gunicorn until the container starts up. 2020-05-24 20:53:25 -04:00
Aaron Louie baaf73b5d9 Bumps Python version to 3.7 2020-05-24 13:43:12 -04:00
Aaron Louie be1d54bbc5 Builds Docker image as WSGI + gunicorn 2020-05-24 12:37:11 -04:00
Dan Funk 4627318818 Dropping flask_sso library in favor of reading from the headers directly. Updating login to read from ldap once it has the user_id. Adding more information to the sso endpoint. 2020-05-22 07:55:58 -04:00
Dan Funk 5f793db606 It is critical that the Pipfile python version matches the python version on the server. 2020-05-20 15:07:16 -04:00
Dan Funk 8647ebee42 Moving spiff back to master branch, with fixes for parallel, and performance improvements. 2020-05-20 10:57:20 -04:00
Dan Funk 7ce460fffc using a branch of spiffworkflow that fixes a deep recursion issue - this isn't perfect, but it's miles better than it was. 2020-05-17 17:06:00 -04:00
Dan Funk 2d3402a719 Ldap Service with Test and mocks.
LDAP_URL can be set in an environment variable.
2020-04-20 15:16:33 -04:00
Dan Funk f4342fc785 It became impossible to use the Swagger ui when we started adding authentication to all of the calls. I discovered Connexion and Swagger have a default way of handing JTW authentication and this cleans up our code quite a bit, moves the securing of endpoints into the API Definition, which is quite nice, and removes a whole library dependency (I never get to do that!) I added a SWAGGER_AUTH_KEY that can be used in non-production environments to allow users to quickly authenticate from the Swagger ui. I also removed all api calls to simple little happy api services, because that is just mean and pointless. 2020-03-24 14:15:21 -04:00
Dan Funk 3eb1167b8e Found a few errors in the sqlalchemy file definition that was causing failures, and had some consistency problems with the IRB Categories file name. The API was bailing out because we had restricted file types to bpmn,svg,or dmn in the connexion config file, I don't restrict this anymore we have plenty of checks elsewhere. Adding xlrd as a dependency - this didn't fail till a push to production. 2020-03-20 08:21:21 -04:00
Dan Funk 83d859fd3a Just merging stuff real quick. 2020-03-18 17:03:36 -04:00
Aaron Louie 3ef4860391 Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database 2020-02-26 18:06:51 -05:00
Dan Funk a642593e3d Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly. 2020-02-18 16:38:56 -05:00