Commit Graph

160 Commits

Author SHA1 Message Date
Aaron Louie 2a84d5196a filter, not filter_by 2020-06-12 14:13:27 -04:00
Aaron Louie e3126620b3 Eschews obfuscation 2020-06-12 14:09:08 -04:00
Aaron Louie 561e254315 Prevents non-admin users from editing each others' tasks. Fixes bug where test user uid was not being set from token. Moves complete form and get workflow API test utility methods into BaseTest. 2020-06-12 13:46:10 -04:00
Dan Funk 777e429382 Merging production back into dev, because we got out of whack somehow. 2020-06-08 14:19:30 -04:00
Dan Funk 8cf420b781 Default mail user name and password to blank. 2020-06-08 14:15:56 -04:00
Dan Funk e370148380
Merge pull request #112 from sartography/rrt/dev
Rrt/dev
2020-06-08 13:18:41 -04:00
Carlos Lopez 0351b3548a Adding bcc to all emails sent 2020-06-08 11:17:17 -06:00
Carlos Lopez f91fbf76b9 Capturing explicit errors from mails 2020-06-08 09:16:26 -06:00
Aaron Louie af1c848f65 Merge branch 'rrt/dev' into rrt/testing 2020-06-07 19:57:09 -04:00
Dan Funk 213d3f3501 Merge branch 'feature/better_approval_status' into rrt/dev 2020-06-05 19:11:16 -04:00
Dan Funk 6861991d8f Allow setting the type of approvals you want back, by status.
Some very minor performance enhancements, that will add up on the Approvers page.
2020-06-05 17:49:55 -04:00
Aaron Louie f0904e75a6 Sets main approval status after related approvals have been populated 2020-06-05 15:54:53 -04:00
Carlos Lopez 663da57d8b Config can read smtp values from environment now 2020-06-05 13:54:37 -06:00
Carlos Lopez 57a7c7fa54 Approve/deny fixes 2020-06-05 13:39:52 -06:00
Dan Funk 1f32a99efe Some approval statuses coming back as null., fixed 2020-06-05 14:55:49 -04:00
Carlos Lopez 16ca4fa2c0 Merge branch 'rrt/dev' into feature/mail-system 2020-06-05 12:35:05 -06:00
Dan Funk f0db5b70fc Adding some additional logic to the approval endpoint so that we take related approvals into account when setting the status. In addtion to prevous status options, there is a new status of "AWAITING" which means there are pending approvals before this approval that still need to be approved or canceled. 2020-06-05 14:33:00 -04:00
Carlos Lopez 4fc1b51cbc Approve/denied emails 2020-06-05 12:08:31 -06:00
Carlos Lopez 4727d87adb Hooking up emails into process - start 2020-06-04 20:37:28 -06:00
Dan Funk b6abb0cbe2 using a restartable strategy to get around login errors 2020-06-04 18:03:59 -04:00
Dan Funk 9cfe00dfd0 Don't bind all the time. 2020-06-04 15:38:45 -04:00
Dan Funk fed6e86f92 Trying to fix LDAP issues on production. Changing LDAP to static only methods, caching the connection and calling bind before all connection requests.
Also assuring we don't load the documents.xls file over and over again.
2020-06-04 14:59:36 -04:00
Carlos Lopez 8c36d9f367 Email calls outline 2020-06-04 11:43:10 -06:00
Dan Funk 50d2acac9c Made a very stupid mistake with LDAP connections, pushing up quickly to production. 2020-06-04 11:57:00 -04:00
Dan Funk 68aeaf1273 BE VERY CAREFUL where you create a new LdapService() - construction is expensive.
Adding a few more details to the "csv" endpoint for RRT.
2020-06-04 10:33:17 -04:00
Dan Funk bbcbfef1ba Fixing the migrations so I don't break the universe. 2020-06-04 10:09:36 -04:00
Dan Funk 1324533865 Some additional cleanup - when a file is "archived" it is no longer returned for any endpoints about files, but it
is directly accessible via id, in the event some request is made for it at a later date.
2020-06-04 09:49:42 -04:00
Carlos Lopez f581bd9f2b Mails for approval process 2020-06-04 00:35:59 -06:00
Dan Funk 217ecfc911 When you can't delete a file, mark it as archived. Don't include archived files in new approval requests. 2020-06-03 17:34:27 -04:00
Dan Funk c179c7781b Do not process or return cancelled approvals via the API. 2020-06-03 16:50:47 -04:00
Dan Funk e102214809 minor cleanup of error codes. 2020-06-03 15:03:22 -04:00
Dan Funk 299ad4fc8b Adding more details to the csv output, and assuring we don't miss people with outstanding approvals that were cancelled. 2020-06-03 07:58:48 -04:00
Dan Funk c7484267e1 For the main approval endpoints - we now group the approvals by study. So you get one record back for each study, but it may have other approvals along with it as "related_approvals".
We now cache the LDAP records - so we look in our own database for the record before calling out to ldap for the details when given a straight up computing id like dhf8r.

Added "date_approved" to the approval model.

And moved the approver and primary investigator into real associated models to make it easier to dump.

Fixed a problem with the validation that was causing it to throw incorrect errors on valid workflows. Getting it to behave a little more like the front end behaves, and respecting the read-only fields.  But it was mainly to do with always returning all the data with each form submission.
2020-06-02 18:17:00 -04:00
Dan Funk b6bf843f6e used 'name' rather than 'value' in the lookup options during validation, causing a disconnect with how this is processed on the front end. 2020-06-01 11:00:56 -04:00
Aaron Louie 7c8b7829ea Merge branch 'rrt/dev' into feature/approvals_enhancements 2020-06-01 00:41:51 -04:00
Carlos Lopez bec11980eb Fixing broken test by using proper FileSchema 2020-05-31 22:00:52 -06:00
Carlos Lopez b2e56f797b Converting ApprovalModel to Approval in order to serialize properly the result 2020-05-31 21:02:47 -06:00
Aaron Louie f0bd8d4f9e Adds approvals to study schema. Adds approvals endpoint 2020-05-31 22:46:32 -04:00
Dan Funk 9c7de39b09 This adds additional file data details to the study model as well. 2020-05-31 21:15:40 -04:00
Carlos Lopez 26809d1470 Waiting status renaming 2020-05-31 13:35:42 -06:00
Dan Funk 2bc735a3f0 Kelly wrote a beautiful method for resetting the workflow that doesn't loose data when reset inside a parallel task, all I needed to do was use it.
Catching TypeErrors and reporting them back to the UI so we don't 500 in a bad way (but we still 500)
2020-05-31 13:48:00 -04:00
Dan Funk 98fb305868 Run the validation process twice, each time it is requested, first populating everything, and then a second time
using on the required form fields.
2020-05-30 18:43:20 -04:00
Dan Funk 1f0e8741ba Run the validation twice, once completing all of the data, and a second time, completing only the required fields.
Also, add a helper method to reduce boiler plate code around Workflow Exceptions.
2020-05-30 17:26:27 -04:00
Dan Funk 860c475b29 Fill out repeating sections during validation process.
Also, when returning error messages, attempt to include the task data for the task that caused the error.
Also, when attempting to delete any file, respond with an API error explaining the issue, and log the details.
2020-05-30 15:37:04 -04:00
Dan Funk 4e4cc7884c Better ldap searching. 2020-05-29 15:17:51 -04:00
Dan Funk afb6be7c60 re-working the way the redirects function, so we pass arguments as a get parameter. Just trying to get rid of the weird lag on production.
I noticed the validation sometimes looks ahead for files, so looking at all the tasks now, not just the ready tasks for the lookup field.
Ran into an issue with validation where a workflow model was required, so I create one and delete it.  Another refactor for another day.
2020-05-29 04:42:48 -04:00
Dan Funk 11413838a7 Faster lookup fields. We were parsing the spec each time to get details about how to search. We're just grabbing the workflow id and task id now and building that straight into the full text search index for faster lookups. Should be peppy.
Another speed improvement - data in the FileDataModel is deferred, and not queried until it is specifically used, as the new data structures need to use this model frequently.
2020-05-29 01:39:39 -04:00
Dan Funk aea78de066 Merge remote-tracking branch 'origin/dev' into feature/file_refactor_part2 2020-05-28 20:06:32 -04:00
Dan Funk dba41f4759 Ludicrously stupid launch in a refactor of the way all files work in the system at a time where I crave sleep and peace above all other things.
Added a File class, that we wrap around the FileModel so the api endpoints don't change, but File no longer holds refences to versions or dates of the file_data model, we
figure this out based on a clean database structure.

The ApprovalFile is directly related to the file_data_model - so no chance that a reviewer would review the incorrect version of a file.py

Noticed that our FileType enum called "bpmn" "bpmm", hope this doesn't screw someone up.

Workflows are directly related to the data_models that create the workflow spec it needs.  So the files should always be there.  There are no more hashes, and thus no more hash errors where it can't find the files to rebuild the workflow.py

Not much to report here, other than I broke every single test in the system at one point.  So I'm super concerned about this, and will be testing it a lot before creating the pull request.
2020-05-28 20:03:50 -04:00
Dan Funk cd7f67ab48 A major refactor of how we search and store files, as there was a lot of confusing bits in here.
From an API point of view you can do the following (and only the following)

/files?workflow_spec_id=x
* You can find all files associated with a workflow_spec_id, and add a file with a workflow_spec_id
/files?workflow_id=x
* You can find all files associated with a workflow_id, and add a file that is directly associated with the workflow
/files?workflow_id=x&form_field_key=y
* You can find all files associated with a form element on a running workflow, and add a new file.
   Note: you can add multiple files to the same form_field_key, IF they have different file names. If the same name, the original file is archived,
   and the new file takes its place.

The study endpoints always return a list of the file metadata associated with the study.  Removed /studies-files, but there is an
endpoint called

/studies/all  - that returns all the studies in the system, and does include their files.

On a deeper level:
 The File model no longer contains:
  - study_id,
  - task_id,
  - form_field_key

Instead, if the file is associated with workflow - then that is the one way it is connected to the study, and we use this relationship to find files for a study.
A file is never associated with a task_id, as these change when the workflow is reloaded.
The form_field_key must match the irb_doc_code, so when requesting files for a form field, we just look up the irb_doc_code.
2020-05-28 08:27:26 -04:00