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cr-connect-workflow
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252 Commits 13 Branches 0 Tags 8.7 MiB
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252 Commits

Author SHA1 Message Date
Aaron Louie 27d7afb656 Adds Protocol Builder models and schemas. Reorganizes and cleans up some files. 2020-02-27 09:54:46 -05:00
Aaron Louie 3ef4860391 Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database 2020-02-26 18:06:51 -05:00
Dan Funk c6eb2d937d Enable autoescape security feature for processing markdown data in descriptions from the BPMN Diagrams 2020-02-25 16:21:47 -05:00
Dan Funk 1e8a095760 Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY. 2020-02-25 12:01:25 -05:00
Aaron Louie 002207cbca Adds redirect URL to login handler 2020-02-24 16:59:16 -05:00
Aaron Louie 1ac9180304 Updates tests to match changing sso_backdoor to query string params 2020-02-21 12:03:14 -05:00
Aaron Louie e4efc5e4e2 Fixes broken test 2020-02-21 12:02:35 -05:00
Aaron Louie 443d38a9a1 Prevents duplication of study on update. 2020-02-21 11:24:51 -05:00
Aaron Louie eb6354db6e Moves sso_backdoor parameters to query string. Prevents duplication of user on update. 2020-02-21 11:24:39 -05:00
Aaron Louie 01228d5a8a Edits frontend callback URL 2020-02-20 21:10:34 -05:00
Aaron Louie 9f4301712e Merge remote-tracking branch 'origin/master' 2020-02-20 17:23:17 -05:00
Aaron Louie a6e0809183 Adds SSO attributes. Prevents uid duplication errors. 2020-02-20 17:23:10 -05:00
Dan Funk d3c51af1f5 Merge branch 'master' of github.com:sartography/cr-connect-workflow 2020-02-20 16:04:44 -05:00
Dan Funk af35f182f6 Random Fact updated with a markdown set of examples 2020-02-20 16:04:38 -05:00
Aaron Louie 0cda7c66e5 Merge remote-tracking branch 'origin/master' 2020-02-20 15:43:34 -05:00
Aaron Louie 581434b453 Adds SSO header attributes 2020-02-20 15:43:29 -05:00
Dan Funk a94596112d Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY. 2020-02-20 14:35:21 -05:00
Dan Funk 8b48acea9a Protocol builder connections, default configuration 2020-02-20 13:30:48 -05:00
Dan Funk 2cc6010c8d Protocol builder connections 2020-02-20 13:30:04 -05:00
Dan Funk 705cfc0a35 forgot a critical migration in the last commit. 2020-02-19 12:00:14 -05:00
Dan Funk 1a9b5b50e5 Merge branch 'master' of github.com:sartography/cr-connect-workflow 2020-02-18 16:39:11 -05:00
Dan Funk a642593e3d Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly. 2020-02-18 16:38:56 -05:00
Aaron Louie 6075a32d07 Edits default value 2020-02-18 10:17:14 -05:00
Aaron Louie 16db1e3504 Adds default_value to Task schema 2020-02-18 10:14:03 -05:00
Aaron Louie 386df9e912 Generates coverage data 2020-02-12 11:31:02 -05:00
Aaron Louie 3cd27c3410 Switches back to last-known working config. Installs coverage. 2020-02-12 11:20:54 -05:00
Aaron Louie 7855bed328 Python 3.7 isn't available anymore on Travis CI trusty? Defaults to Python 3.6.1 2020-02-12 11:14:04 -05:00
Aaron Louie 5a53ddb88c Fixes vulnerability identified by SonarCloud 2020-02-12 11:07:01 -05:00
Aaron Louie 0664fec141 Generates coverage.xml report 2020-02-12 11:04:04 -05:00
Aaron Louie a5894b1745 Removes sonar token 2020-02-12 10:42:00 -05:00
Aaron Louie 8322713ea6 Running sonar from Travis CI 2020-02-12 10:31:08 -05:00
Aaron Louie 6408e45093 Trying to get sonar to run properly 2020-02-12 10:21:00 -05:00
Aaron Louie 5f461d9e87 Fixes FactService 2020-02-11 22:13:46 -05:00
Aaron Louie a69c709bd1
Merge pull request #8 from sartography/feature/crc_demo_workflows 
Feature/crc demo workflows
 2020-02-11 15:20:22 -05:00
Aaron Louie b0b1a6e5e8 Saves form field key 2020-02-11 15:03:25 -05:00
Aaron Louie 0a3a932c50 Comments out study workflow for now. Fixes failing unit tests. 2020-02-11 13:40:14 -05:00
Aaron Louie 0ef1a178ed Merge branch 'master' into feature/crc_demo_workflows 2020-02-11 13:30:57 -05:00
Aaron Louie f58ed5b6ee Adds another user task at the end 2020-02-11 12:14:10 -05:00
Dan Funk 709bae76b2 Removing a rogue comma that was causing havoc. Also, don't fail if a mock already exists in the test database. 2020-02-11 11:11:21 -05:00
Dan Funk 879a248002 Adding a test to assure the file creation occurs as expected via the API. 2020-02-10 20:54:22 -05:00
Aaron Louie 359fb4a2f3 Adds draft demo workflow specs 2020-02-10 17:19:11 -05:00
Aaron Louie f128e7206b Adds placeholder scripts for testing 2020-02-10 17:18:51 -05:00
Dan Funk 9f0eb8477a Fix for a bug in the File service where it was being overly restrictive. 2020-02-10 16:27:57 -05:00
Dan Funk 1d24ebe382 Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level. 2020-02-10 16:19:23 -05:00
Aaron Louie fd9c685979 Handles processes with multiple top-level elements 2020-02-10 15:20:45 -05:00
Aaron Louie b63ad7f707 Adds new token 2020-02-10 10:03:21 -05:00
Aaron Louie ba2fe6c740 Adds sonar properties 2020-02-08 14:00:37 -05:00
Aaron Louie f142d02a30 Adds workflow_spec_id back in to WorkflowApi 2020-02-07 12:36:08 -05:00
Dan Funk eae6c8dd1a update to last commit, left an extra column on workflow model that does not need to exist. 2020-02-07 11:57:48 -05:00
Dan Funk e1148e1b3d Merge branch 'master' of github.com:sartography/cr-connect-workflow 2020-02-07 11:34:57 -05:00