10 Commits

Author	SHA1	Message	Date
Kelly McDonald	de54b63e20	Process scripts with no shebang (#!) as a regular python script. If there is a shebang, we look up the class as we did before. ... I've also made it so that it falls back if we accidentally forget to add a shebang to a study as this would be a breaking change. With the fallback feature, it should work with unmodified bpmn documents.	2020-07-17 10:56:04 -04:00
Aaron Louie	6c36a32411	Adds DSP	2020-05-06 10:37:43 -04:00
Aaron Louie	4ecb0cb3a3	Updates BPMN files	2020-05-05 16:15:38 -04:00
Dan Funk	f1f8b91c9c	Refactor the document details scripts. Now there is one script, it returns data in a consistent format, and has all the details required. The script is located in StudyInfo, with the argument documents. Make note that it returns a dictionary of ALL the documents, with a field to mark which ones are required according to the protocol builder. Others may become required if a workflow determines such, in which case the workflow will enforce this, and the document will have a count > 0, and additional details in a list of files within the document. I modified the XLS file to use lower case variable names, because it disturbed me, and we have to reference them frequently. Removed devious "as_object" variable on get_required_docs, so it behaves like the other methods all the time, and returns a dictionary. All the core business logic for finding the documents list now resides in the StudyService. ... Because this changes the endpoint for all existing document details, I've modified all the test and static bpmn files to use the new format. Shorting up the SponsorsList.xls file makes for slightly faster tests. seems senseless to load 5000 everytime we reset the data. Tried to test all of this carefully in the test_study_details_documents.py test.	2020-04-29 15:08:11 -04:00
Aaron Louie	496e5b7719	Updates all workflow specs to match staging	2020-04-27 22:54:05 -04:00
Dan Funk	ee999a0f15	fixing a bunch of stupid mistakes because I am tried.	2020-04-20 20:28:12 -04:00
Aaron Louie	faf4c0df97	Updates BPMN and DMN files	2020-04-15 10:58:13 -04:00
Dan Funk	697127660f	Assure that all script tasks place data in a dictionary that is named exactly the same as the class - which is also the same as the Script tag.	2020-04-07 14:09:21 -04:00
Dan Funk	c6b6ee5d70	Renamed the required_docs script to just "documents", and it returns all documented in the irb_documents look up table indexed on the "Code" - so details become available in the task data like "documents.IRB_INFOSEC_DOC.required". ... Updated the irb_documents with shorter code names, thanks to Alex. Re-worked the DMN models so they can properly read from this new datastructure.	2020-04-06 16:56:00 -04:00
Dan Funk	4a916c1ee3	Created a "StudyService" and moved all complex logic around study manipulation out of the study api, and this service, as things were getting complicated. The Workflow Processor no longer creates the WorkflowModel, the study object handles that, and only passes the model into the workflow processor when it is ready to start the workflow. ... Created a Study object (seperate from the StudyModel) that can cronstructed on request, and contains a different data structure than we store in the DB. This allows us to return underlying Categories and Workflows in a clean way. Added a new status to workflows called "not_started", meaning we have not yet instantiated a processor or created a BPMN, they have no version yet and no stored data, just the possiblity of being started. The Top Level Workflow or "Master" workflow is now a part of the sample data, and loaded at all times. Removed the ability to "add a workflow to a study" and "remove a workflow from a study", a study contains all possible workflows by definition. Example data no longer creates users or studies, it just creates the specs.	2020-03-30 08:00:16 -04:00