613 Commits

Author SHA1 Message Date
Aaron Louie
b4595b345a Raises ApiError for 'display_name' extension property exception 2020-08-04 13:59:50 -04:00
Carlos Lopez
04399eec2a Accepting None for primary_investigator_id 2020-08-04 11:38:46 -06:00
Carlos Lopez
cd9376cf8e Adding back ability to update studies 2020-08-04 09:13:24 -06:00
Carlos Lopez
50b207307a Merge branch 'dev' into feature/update_study_status_latest 2020-07-31 14:26:24 -06:00
Carlos Lopez
4fcba113b8 Fixing tests 2020-07-31 11:49:04 -06:00
Carlos Lopez
2c2967e633 Normalizing enum values 2020-07-31 11:19:50 -06:00
Carlos Lopez
5d23223e51 New study status update 2020-07-30 21:03:11 -06:00
Aaron Louie
73699e66bd Merge branch 'dev' into feature/admin_impersonations 2020-07-30 17:36:20 -04:00
Dan Funk
9704cbcb26 Modifications to the ldap scripts to bring them back in line with what Kelly is doing with the evaluation process. 2020-07-30 13:35:20 -04:00
Aaron Louie
f8944da31f Merge branch 'dev' into feature/admin_impersonations 2020-07-30 13:01:46 -04:00
Aaron Louie
faba0f55ab Adds AdminSession model and refactors impersonation methods to use it. 2020-07-30 12:40:53 -04:00
Dan Funk
a6ec0c92c7 Merge remote-tracking branch 'origin/dev' into cr-connect-106-augment-eval-methods 2020-07-30 11:38:47 -04:00
Dan Funk
44deee12de Merge branch 'dev' into feature/improved_task_event_api 2020-07-30 11:28:52 -04:00
Dan Funk
37d1ba5d5a
Merge pull request #160 from sartography/feature/ldap_lookup_script
Ldap lookup script
2020-07-30 11:27:38 -04:00
Dan Funk
bf4d882519 Merge branch 'dev' into feature/ldap_lookup_script 2020-07-30 11:19:24 -04:00
Dan Funk
2905fc6173 Merge branch 'feature/ldap_lookup_script' of github.com:sartography/cr-connect-workflow into feature/ldap_lookup_script 2020-07-30 11:17:48 -04:00
Aaron Louie
aa0f24bd33 Fully deletes users from g in test tearDown 2020-07-30 10:40:06 -04:00
Dan Funk
31982f81ae Merge branch 'dev' into feature/documents_publishing
# Conflicts:
#	Pipfile.lock
2020-07-30 10:17:08 -04:00
Aaron Louie
1b0ebecbf4 Uses Flask session to store impersonation state. 2020-07-30 10:17:02 -04:00
Aaron Louie
d301e9e6fa Adds list_users endpoint. Adds admin impersonate uid parameter to user endpoint. Adds some utility methods to user service. Refactors authentication tests. 2020-07-29 22:47:47 -04:00
Aaron Louie
63537d7765 Adds is_admin boolean flag to user schema 2020-07-29 22:45:56 -04:00
Carlos Lopez
de49397549 Adjustings tests for protocol builder status changes 2020-07-29 10:51:34 -06:00
Carlos Lopez
73a6b7adf1 Fixing tests 2020-07-29 10:25:57 -06:00
Carlos Lopez
6aa21638de Updating properly study status & fixing tests 2020-07-29 10:25:57 -06:00
Aaron Louie
f897ee3aea Merge branch 'feature/approvals_dashboard_prototype' into feature/admin_impersonations 2020-07-29 10:32:46 -04:00
Dan Funk
0ea4c13d09 Convert protocol builder status to always be in lower case in order to better match the front end. And also fixing an issue with the multi_instance that is oddly broken suddenly, and I don't know why. 2020-07-28 17:16:48 -04:00
Aaron Louie
79adb673f2 Fixes display_name custom properties 2020-07-28 14:04:18 -04:00
Dan Funk
4d11fc04a0 dropping the "read_only" flag in favor of a "do_engine_steps" flag, which more clearly defines what is happening. 2020-07-28 13:51:29 -04:00
Dan Funk
f15626033d Allow the workflow to be requested without making changes to the workflow - requires that you specify a read_only flag of true, otherwise it assumes that you want a fully prepared workflow with the next ready task set to run. 2020-07-28 13:33:38 -04:00
Kelly McDonald
d617af8565 All tests are passing - may need to refactor a bit, / remove comments 2020-07-28 11:02:49 -04:00
Dan Funk
300026cbc8 Expanding the task events endpoint to accept workflow and study ids as additional filters.
Removing events from the study endpoint, too noisy.
2020-07-28 10:16:48 -04:00
Dan Funk
0cb480801b Provide event data on the Study api endpoint.
Speed up the tests a little, because that got out of hand.  Need to dig into what is causing this problem.
2020-07-27 17:05:01 -04:00
Dan Funk
51d6d6a5fa Fixing failing tests around a notifications workflow. 2020-07-27 16:54:46 -04:00
Dan Funk
8d42d520a0 Adding events to the study that is returned via the api. 2020-07-27 16:32:23 -04:00
Dan Funk
452f2c3723 Building out a user service for getting the current user, it will provide a number of functions, one of which will allow administrative users to impersonate other users in some circumstances (but will assure that we log events correctly when an impersonation occures) 2020-07-27 14:38:57 -04:00
Dan Funk
0d2cb8c1b8 Correcting an issue with the Navigation where it did not correctly handle looking back to a previous task within the workflow.
In some cases the session was not getting committed, leaving rogue assignments outstanding for a workflow.
2020-07-27 12:36:20 -06:00
Aaron Louie
263ea4d00f Adds manual task 2020-07-27 12:35:53 -06:00
Aaron Louie
6cdb9c3b3a Exposes date in TaskEvent endpoint 2020-07-27 12:35:53 -06:00
Aaron Louie
4adb6a1b44 Adds enrollment_date to study model 2020-07-27 12:34:25 -06:00
Dan Funk
6379b26a71 Add a few more details to the workflow metadata model. 2020-07-27 12:34:25 -06:00
Kelly McDonald
cc55aed89c Change exception name 2020-07-27 12:18:28 -04:00
Kelly McDonald
70ad3872a7 Fix several bugs, most had an issue with the bpmn document 2020-07-27 12:02:34 -04:00
Dan Funk
824582dab1 Hot fix to correct for a failing test due to updates in Spiffworkflow library,
and modifying the token authorization so that we can log in as different users when not in production mode.
2020-07-27 11:25:29 -04:00
Kelly McDonald
a124e13c6a Replace all legacy style calls with new calls.
Still having issues where we try to eval an empty definition, not quite sure why there is a difference from what we had before. I may need to revert some of it and determine what is going on.
2020-07-24 14:33:24 -04:00
Kelly McDonald
f5ab283538 Test of adding in the ability of augmenting the workflow to include internal scripts like StudyInfo
This is the first waypoint on a larger effort to make all of the 'special scripts' that currently require a shebang to be just another python function.
2020-07-24 12:08:46 -04:00
Carlos Lopez
842d2ee100 Supporting study status update 2020-07-23 10:58:24 -06:00
Aaron Louie
6fae89b1fc Adds manual task 2020-07-22 14:48:36 -04:00
Aaron Louie
b87f55fbd7 Exposes date in TaskEvent endpoint 2020-07-22 14:48:10 -04:00
Aaron Louie
aa7437bfc4 Merge branch 'dev' into feature/approvals_dashboard_prototype 2020-07-22 13:08:32 -04:00
Dan Funk
acb43cc271 Removing an unused function and addign a fix me. 2020-07-22 11:40:49 -04:00