sartography/cr-connect-workflow
1
0
Fork 0
mirror of https://github.com/sartography/cr-connect-workflow.git synced 2025-02-23 13:18:35 +00:00
Code Issues Packages Projects Releases Wiki Activity
590 Commits 14 Branches 0 Tags 9 MiB
Commit Graph

314 Commits

Author SHA1 Message Date
Aaron Louie
9a26fc8e80 Merge remote-tracking branch 'origin/feature/reference_files' into feature/workflow_spec_categories 2020-03-18 16:58:57 -04:00
Aaron Louie
f0678b43d4 Minor fixes 2020-03-18 16:58:50 -04:00
Dan Funk
02be8ede75 Merge remote-tracking branch 'origin/master' into feature/reference_files 2020-03-18 15:16:34 -04:00
Aaron Louie
853b2b2502 Populates category 2020-03-18 15:16:15 -04:00
Aaron Louie
532d6b5dd6 Adds CRUD endpoints for workflow spec categories 2020-03-16 16:30:56 -04:00
Aaron Louie
4db456dcea Adds workflow spec category methods 2020-03-16 16:12:39 -04:00
Aaron Louie
cbd8d2f46c Silences SQLALCHEMY_TRACK_MODIFICATIONS warning 2020-03-16 13:47:17 -04:00
Aaron Louie
40e12f5ab5 Resolves marshmallow_sqlalchemy.ModelSchema deprecation warning 2020-03-16 13:37:31 -04:00
Aaron Louie
7d31bc24eb Attempting to address "FutureWarning: Implicit (flask) JSON serialization" warning 2020-03-16 13:24:15 -04:00
Aaron Louie
a98251237b Adds workflow spec category to API 2020-03-16 12:10:32 -04:00
Aaron Louie
6af1693bdc Fixes SonarCloud issue L23. Verifies that study ids match. 2020-03-16 10:37:06 -04:00
Aaron Louie
0cc98616fd Merge branch 'master' into feature/workflow_spec_categories 2020-03-16 10:25:03 -04:00
Aaron Louie
3885bc7624 Merge remote-tracking branch 'origin/master' into feature/delete_study 2020-03-16 08:49:44 -04:00
Aaron Louie
cd6a70b747 Fixes code smell issues identified by SonarCloud 2020-03-16 08:31:19 -04:00
Aaron Louie
f9dbbefe89 Adds status spec to study when workflow is added. 2020-03-16 08:05:30 -04:00
Aaron Louie
bdd07685c6 Adds status spec when adding a study, and adds/removes workflows from study based on output data from status spec. 2020-03-15 15:54:13 -04:00
Aaron Louie
e4af6f77d0 Adds is_status flag to workflow_spec, status_spec_id & version to study, and is_active flag to WorkflowApi 2020-03-15 15:52:59 -04:00
Dan Funk
779674ab60 Add the ability to upload and request general reference files by name. These will be used across workflows and will frequently contain lookup tables that can be referenced by various script tasks. 2020-03-13 15:03:57 -04:00
Aaron Louie
902dba7191 Adds is_status flag to workflow specs 2020-03-13 14:56:46 -04:00
Dan Funk
05b39df745 Fixes #12: Catching some specific common errors and re-raising as APIErrors with detailed codes and descriptions to improve debugging. In doing so, improving the error handling in the event a soft-reset causes an immediate error - and resetting to the original version of the specification in these events, to allow users the chance to try a hard reset instead. 2020-03-11 16:33:18 -04:00
Aaron Louie
f177e33ad6 Tiny tweak 2020-03-11 15:31:23 -04:00
Aaron Louie
3262833102 Requires login 2020-03-11 15:27:22 -04:00
Aaron Louie
e977ee9e0d Updates task counts when getting workflow 2020-03-11 15:16:42 -04:00
Aaron Louie
bbfe9291e0 Adds endpoint to get workflow stats. Adds a test for the endpoint. 2020-03-11 14:28:53 -04:00
Aaron Louie
be17c2159c Adds workflow stats and task events models and schemas. Updates workflow stats and logs task completion when task data is updated. 2020-03-10 21:29:57 -04:00
Aaron Louie
f1b6718068 Adds task counts 2020-03-10 15:46:14 -04:00
Dan Funk
e91d7aff2f Fixes #11: adding a delete endpoint for studies. It won't delete studies that have workflows, you have to delete those first) 
Removing the "default" error response from the api.yml, it was all noise.
 2020-03-09 15:12:40 -04:00
Dan Funk
95750d4fb0 Merge branch 'feature/pb_services' of github.com:sartography/cr-connect-workflow into feature/pb_services 2020-03-09 12:41:42 -04:00
Dan Funk
3b39f3875d Fix data being over-written in the study_info. 2020-03-09 12:41:35 -04:00
Aaron Louie
acad0023d2 Fixes a bug in get_study_workflows and adds a test covering it 2020-03-06 10:52:41 -05:00
Dan Funk
9fcd6f38f4 Merge remote-tracking branch 'origin/master' into feature/pb_services 2020-03-05 17:13:41 -05:00
Dan Funk
e501fb31fd Cleaning up swagger docs. 2020-03-05 17:10:00 -05:00
Dan Funk
906bacff6a Expose a flag on the workflow model in the api to shown if it is using the latest spec. Added a soft_reset and hard_reset onto the workflow endpoint that will allow you to cause a hard or soft reset. 2020-03-05 16:45:44 -05:00
Dan Funk
7b21b78987 Workflow Processor will deserialize workflows using the version of the BPMN files used during creation, but allows for both a soft and hard reset - soft resets will use the new workflow without a restart and will retain full history. A hard-reset will restart the workflow from scratch, but will retain the data from the last completed task. Workflows have a complex version number associated with them that is used during the deserialization to find the correct files. 2020-03-05 15:38:30 -05:00
Aaron Louie
e07ad8d21c Updates training session BPMN files. Fixes PB status enums. 2020-03-05 14:21:03 -05:00
Dan Funk
697d930eab Modify the workflow processor to accept a workflow model - so it can take on more of the responsibilities of updating this model and managing versions. 
Changing the version information so that it includes the numbers of the files used to generate the serialized workflow.
 2020-03-05 13:25:28 -05:00
Dan Funk
70611e2c1d Adding the version of the specification used to create a workflow to the workflow api endpoint. Though the exact content of this version is likely to change. 
Split the API specific models out from the workflow models to help me keep this straight.
Added tests to help me understand the errors thrown the and resolution path when a workflow specification changes in the midst of a running workflow.
 2020-03-05 11:18:20 -05:00
Dan Funk
78b6f040eb Add the ability to forcibly restart a workflow, while retaining that workflows data. 
A workflow specification knows it's version number, which is generated by the version of the files that make it up.
A workflow specification version number is the primary file (the lead BPMN) followed by a consistency ordered version each extra file associated with the workflow.  A change in any file modifies the specifications version.
 2020-03-04 17:08:45 -05:00
Dan Funk
c5cee4761e Improve version handling of files. Consolidate more of this logic in FileService. Place the version on the actual data model, not the file model, so the file model remains the same, and we just version the data associated with it. 2020-03-04 13:40:25 -05:00
Aaron Louie
f258090a0b Fixes broken unit test 2020-03-04 09:54:00 -05:00
Aaron Louie
8cbd6f892f WIP: Mocks study details PB endpoint response 2020-03-03 20:56:46 -05:00
Aaron Louie
01720a8bbf Replaces migration and fixes broken tests 2020-03-03 16:02:01 -05:00
Aaron Louie
93168482c2 Merge remote-tracking branch 'origin/master' 2020-03-03 15:46:24 -05:00
Aaron Louie
668de6c4dc Edits Protocol Builder statuses 2020-03-03 15:46:20 -05:00
Dan Funk
94f828dfd6 Adding a simple endpoint that describes what scripts are currently available, along with a brief description. 2020-03-03 15:30:42 -05:00
Dan Funk
7194d7d374 Standardizing the script tasks that can be executed on the server, adding tons of error messages for when things go wrong. All scripts must exist in side of the crc/scripts directory. 
Adding a new script that script tasks can use to add in data about the study.

Moving all the test workflow specifications out of the main load.

fixing a pile of tests so they can find workflow specs that are now moved into the test directory.
 2020-03-03 13:52:45 -05:00
Aaron Louie
f7416065da Merge remote-tracking branch 'origin/master' 2020-03-02 13:16:43 -05:00
Aaron Louie
a24b67d5db Updates DSP BPMN 2020-03-02 13:16:36 -05:00
Aaron Louie
b0c4996fb3 Populates documentation. 2020-03-02 13:14:03 -05:00
Dan Funk
5e3fdaaa94 New set of "Tools" api endpoints, that provides a way to quickly render markdown or word documents by uploading json data and a template to populate. 
Improved Error messages / Error processing.  You can now just throw an APIError anywhere, and it will be properly serialized and returned.
 2020-02-29 17:22:38 -05:00