65e62a72e1
These migrations were not runnable from blank state, so cleared out broken code, so someone can still brining up a system.
2022-02-17 15:04:09 -05:00
b72ecb8375
Another re-work to fix 619 - and to assure that we aren't rebuilding the lookup tables too frequently.
2022-02-17 11:59:48 -05:00
eb7760fa55
Adding the migration - very destructive, but required for running the app.
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minor fixes - there is still some weird problems with study id and user id being null that I need to track down, but the issue is sporadic, and hard to track down.
2022-02-10 11:50:31 -05:00
ff9b2694ae
Fix migrations that depend on removed models.
2022-02-07 11:56:22 -05:00
5e826ed0cd
Adding the migration.
2022-02-02 16:21:45 -05:00
a6dd7a695d
The 7225 migration will cause all migrations to fail because it trys to import a service that no longer exists
2022-02-02 16:19:35 -05:00
d82367ab2a
Move temp_migration_service code into migration 7225d990740e
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Delete test_files_to_filesystem and test_files_from_filesystem--they were only used to give me access to the migration methods
2022-01-26 09:58:46 -05:00
f3637ee6a0
resolving todos, as they are done, and removing commented out code that is no longer in use.
2022-01-25 16:37:17 -05:00
f815add699
1. Add a default directory for the location of SYNC files.
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2. Added a last_updated column to the lookup table
3. The Lookup service now uses the above, and compares it to the actual file date, we can then rebuild the lookup if needed.
4. That 755 migration loads up the models, so when you change the models, the migration starts to fail. Not really sure what to do here, but modify the migration while we are in process.
2022-01-20 13:05:58 -05:00
31653ec85a
delete unused migration
2022-01-19 15:52:36 -05:00
d83f28e1a7
Pushed so Dan can play
2022-01-18 15:55:49 -05:00
68ac056457
Merge branch 'dev' into files-to-filesystem-572
2022-01-18 08:18:14 -05:00
6e0bf65093
Prepping for merging current dev.
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Will need to change the down revision, and fix the migration
2022-01-18 08:17:36 -05:00
e67a1554ea
Always but always but ALWAYS, use server_default=func.now() when setting up a datetime field we autopopulate.
2022-01-12 12:33:59 -05:00
7176452fe3
forgot the migration, also fixing an error in the TaskLogQuerySchema.
2022-01-10 13:26:16 -05:00
d60ebf9a54
First attempt at changes to LookupFile table
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Want to migrate data and modify table
Have to get session through bind
2022-01-06 14:28:20 -05:00
86a6039dc8
*** WIP ***
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**Many** tests are failing!
Committing so I can merge dev into this branch
2022-01-06 11:46:54 -05:00
a44300bd96
More upgrade code - delete associated data for each processed file
2022-01-04 07:24:21 -05:00
5a46d56158
deleting the file_data records for the processed files
2021-12-17 12:57:28 -05:00
797f8a2cfc
Added another migration to remove slashes from names of files, workflow_specs, and workflow_spec_categories
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Changed the order to put it before the existing one.
2021-12-17 11:48:24 -05:00
5c90ce01a6
*** WIP ***
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Temp services `ToFilesystemService` and `FromFilesystemService` for migrating files To and From the filesystem - Not sure where these classes will end up
Tests to call the two services.
upgrade method in migration that writes workflow spec files and metadata to filesystem
2021-12-16 14:22:37 -05:00
338352017b
*** WIP ***
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Moving files to the filesystem
Tools for reading/writing metadata for categories and specs
2021-12-16 08:41:49 -05:00
acbb8898e4
Merge branch 'more-study-statuses-562' into waiting-workflow-errors-566
2021-12-10 16:52:07 -05:00
bf21f78085
Seeded progress_status column when status is in_progress
2021-12-10 16:27:17 -05:00
6d09aa1817
We moved the new statuses to a new column and created a separate enum class for them.
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They really are sub_statuses of the in_progress status
2021-12-10 15:57:02 -05:00
61975093f9
Renamed some files to include the word `progress`
2021-12-10 15:47:34 -05:00
52baf25459
In `WorkflowService.do_waiting`, if a workflow causes an exception, change its status from `waiting` to `erroring` so we don't continue to call it in `do_waiting`.
2021-12-09 15:33:39 -05:00
ac82187bac
We need a migration for the new study statuses
2021-12-09 13:32:21 -05:00
b0c479420d
New task_log model with schema, and migration
2021-10-27 12:19:09 -04:00
f1dbda7f95
Fix timestamp field to use (UTC) timezone
2021-10-13 11:46:57 -04:00
699fc7daac
Change column in email table from workflow_id to workflow_spec_id
2021-10-12 13:42:11 -04:00
cdcb3a8bd0
Fixed revision conflict
2021-10-07 12:39:07 -04:00
24932072dc
Merge branch 'dev' into email-data-script-487
2021-10-07 12:30:13 -04:00
6f93554e7e
Migration script for new email columns
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!!!This will need to be merged with another migration happening in another ticket concurrently!!!
2021-10-07 09:23:58 -04:00
4068fbbc08
Migration to fix the names of the workflow specs.
2021-10-06 15:27:26 -04:00
fcf538ca92
remove `name` column from workflow_spec and workflow_spec_category
2021-10-05 13:10:36 -04:00
d5d4496cd0
Admin flag on category + migration + updated test
2021-09-29 16:53:59 -04:00
8b8cfde6cb
Add `short_name` and `proposal_name` to the study model
2021-09-17 11:53:45 -04:00
3d7dadc319
Model changes and revision file for task_spec column to file and data_store models
2021-08-26 10:36:10 -04:00
fcebc6ac2b
Revision file for DB changes
2021-08-16 13:02:12 -04:00
25319a0e6a
Make changes to alembic process - fix test for new API
2021-08-02 08:59:24 -04:00
d7c66fb055
fix revisions
2021-07-29 09:41:39 -04:00
41ad7935f8
Merge branch 'dev' into 367-Call-Activity
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# Conflicts:
# Pipfile.lock
2021-07-29 09:28:21 -04:00
2455495457
got library side working - still need to have parent working
2021-07-22 10:20:34 -04:00
1f0b881b92
Hot patch, merging two heads.
2021-07-12 11:14:31 -04:00
7070761089
Merge pull request #338 from sartography/document-spreadsheet-name-380
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Document spreadsheet name #380
2021-07-12 10:11:16 -04:00
1c9db16bff
Migration to change filename from `irb_documents` to `documents` in the database
2021-07-07 13:27:57 -04:00
23be257db0
Add user_uid column to file_data table
2021-07-06 17:07:47 -04:00
a1bb30e689
Switching from using "default" to "server_default" for all default time settings, and running migrations so that this is set at the database level rather than in python, to hopefully correct some issues with dates being 4 hours in the future. Having a very hard time replicating this issue locally.
2021-05-14 12:28:50 -04:00
8f28970f92
Resolving an alembic conflict.
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Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens. This seems to be working locally.
2021-05-04 13:39:49 -04:00
Dan
mike cullerton
alicia pritchett
Kelly McDonald
Mike Cullerton