sartography/cr-connect-workflow
1
0
Fork 0
mirror of https://github.com/sartography/cr-connect-workflow.git synced 2025-02-23 21:28:32 +00:00
Code Issues Packages Projects Releases Wiki Activity
1,807 Commits 14 Branches 0 Tags 9 MiB
Commit Graph

456 Commits

Author SHA1 Message Date
Mike Cullerton
98d641f54d
Merge branch 'dev' into partial_testing 2021-06-30 16:13:31 -04:00
NWalker4483
508ef1ff2b Readded exit_at to workflow param 2021-06-30 11:15:48 -04:00
Dan
9a32fadc2f Merge branch 'dev' into 346-waiting-task-schedule 
# Conflicts:
#	Pipfile.lock
#	crc/services/workflow_service.py
 2021-06-30 10:14:37 -04:00
NWalker4483
2ba52a7095 Merge remote-tracking branch 'origin/HEAD' into partial_testing 2021-06-29 11:21:49 -04:00
Dan
187221537b fixing a corner case around file_data attributes. 2021-06-25 16:18:28 -04:00
Dan
628a587d97 We weren't committing to the database in the correct spot, so the delete wasn't sticking, and we were ending up with test workflows showing up in the main interface. 2021-06-23 16:39:58 -04:00
Dan
1f3febe2df Fix the panda warnings, which means we only support xlsx files now. 
Include the document details when reutnring a file from the file model.
Improve the validation of file form elements.
 2021-06-22 14:58:52 -04:00
NWalker4483
369b518384 Removed WorkflowService.delete_test_data() 2021-06-22 11:29:00 -04:00
Dan
07eb3f9ca8 Moving metrics into SpiffWorkflow so we can run the performance metrics deeply across both systems simultaniously. 
Upgrading libraries.
Fixing deprication issue with Pandas and numpy.
We can only process xlsx files now, plain oldschool xls is fully removed.
 2021-06-18 16:41:55 -04:00
NWalker4483
4ca94b39ce Merge branch 'dev' of https://github.com/sartography/cr-connect-workflow into partial_testing 2021-06-17 15:12:28 -04:00
Dan
a4caae8d64 when validating, we need to take every step to remove the workflows we create during the validation. 2021-06-16 14:40:20 -04:00
Dan
acae6030f5 The API for evaluating python expressions should not raise an error, it can simply return a result of false, and provide an error to explain the problem. In this way the front end doesn't error out when it's running the script tasks but doesn't have enough information to get a valid response back. 
The validation should take into account that repeating sections must be evaluated in the context of the data within the repeating section, not outside of it.
 2021-06-15 16:17:15 -04:00
NWalker4483
5c5b966bc4 Merge branch 'dev' of https://github.com/sartography/cr-connect-workflow into partial_testing 2021-06-15 09:11:18 -04:00
Dan
738a984dcd Merge branch 'dev' of github.com:sartography/cr-connect-workflow into dev 2021-06-11 17:21:47 -04:00
Dan
879d6e1df3 missed a critical change on the backend with the recent file updates, this assures that we properly handle repeating sections during the post process, 
and we update the file doc code in those repeating sections.
 2021-06-11 17:20:25 -04:00
Dan
7282419174 modified the tools api to return the expression and data with the result, making it easier to cash results on the front end, This should help drastically reduce the calls to the python_eval from the front end. 
The post processors for form submissions needs to take repeating sections into account, or it won't find the files it is looking for.
 2021-06-11 08:27:50 -04:00
Kelly McDonald
394906d840 Add refresh_waiting_tasks to the processor do_engine_steps so that if we have a waiting task that has met its condition prior to the scheduler running, it will go ahead and proceed 2021-06-10 08:33:24 -04:00
NWalker4483
e1a4a79b03 Added Partial Workflow spec 2021-06-09 15:21:21 -04:00
NWalker4483
2364c240b2 Error Text Changed 2021-06-09 14:54:43 -04:00
NWalker4483
338fe30984 Merge branch 'dev' of https://github.com/sartography/cr-connect-workflow into partial_testing 2021-06-09 14:32:01 -04:00
NWalker4483
17077be701 exit at task 2021-06-09 12:40:38 -04:00
Kelly McDonald
5f722d675f Add a function that gets runs via a background scheduler to look for any workflows that are in a 'waiting' state - it runs the update waiting tasks and does do_engine_steps 
We have a test for the function that runs, but an assumption was made that the scheduler module has its own unit tests and we do not need to test that.

fixes #346
 2021-06-09 10:42:34 -04:00
Kelly McDonald
0d8d251e8e Temp save to test dev 2021-06-09 09:24:37 -04:00
Dan Funk
586a0f2f1a
Merge pull request #325 from sartography/feature/file_refactor 
Prefer tasks that share a parent over just the the next available tas…
 2021-06-08 11:28:23 -04:00
Dan
8d79fe9d94 Fixing failing tests, and now asserting that we only perform the post_process_form if we actually have a form. 2021-06-08 11:16:10 -04:00
Dan Funk
9c4994581d
Merge pull request #324 from sartography/modify-infinite-loop-312 
Modify infinite loop #312
 2021-06-08 10:30:13 -04:00
Dan Funk
a7b208f50a
Merge pull request #322 from sartography/data-store-refactor-330 
Data store refactor #330
 2021-06-08 08:58:53 -04:00
Dan
59f605c3df Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor. 2021-06-08 08:03:14 -04:00
mike cullerton
c41657301a Modify test_spec and make_test_workflow to accept new optional validate_study_id parameter. 
Modify `make_test_workflow` to use study_id when creating test workflow for validation.
 2021-06-03 14:22:26 -04:00
mike cullerton
e2e35b673d Moved data store code from script to service 2021-06-02 09:59:41 -04:00
Kelly McDonald
a5d67bb245 337 partial fix 
if the user calls the file_data_set function for a valid file with the key 'irb_code' and a value of a valid IRB document code, then we should set the irb code on the file.
 2021-05-27 12:24:30 -04:00
Dan
ef7ee284b2 Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor. 2021-05-19 16:26:16 -04:00
Mike Cullerton
668e2f4e3c
Merge pull request #313 from sartography/feature/add_file_data_store_properties_to_file 
Assure that any data store values associated with a file come back as…
 2021-05-14 16:30:35 -04:00
Dan
8e37f27399 Assure that any data store values associated with a file come back as a part of the get_study_data[documents 
] endooint.
 2021-05-14 15:52:25 -04:00
Dan Funk
4d7ce5eda9
Merge pull request #311 from sartography/deprecate-study-info-protocol-261 
Deprecate study info protocol #261
 2021-05-14 14:14:18 -04:00
Dan Funk
ade7812540
Merge pull request #310 from sartography/get-primary-workflow-301 
Get primary workflow #301
 2021-05-14 12:41:48 -04:00
Dan Funk
6a34fc0cde
Merge pull request #309 from sartography/persist-read-only-data-324 
Persist read only data #324
 2021-05-14 12:38:48 -04:00
Dan Funk
99da502912
Merge branch 'dev' into 321-Markdown-Macro 2021-05-14 12:32:41 -04:00
mike cullerton
9b24ad319b Removed the get_protocol method from study_service. 2021-05-13 16:29:34 -04:00
mike cullerton
8a6bef5af4 New service to get the primary workflow for a workflow_spec, using a workflow_spec_id. 
This is necessary because `primary` is a file parameter, not a workflow_spec parameter.

- you can ask a workflow file whether it is primary, but
- you cannot ask a workflow_spec for its primary workflow file

Now, you can use `workflow_service.get_primary_workflow(workflow_spec_id)`
 2021-05-12 13:51:51 -04:00
mike cullerton
07f3d2c2ee Allow data from read-only fields to persist in task_data 2021-05-07 14:06:53 -04:00
Dan
5a79b80f32 fixes #322, do not error out deleting files that have assocaited data stores, just remove the data store. 2021-05-05 20:21:33 -04:00
Dan
7831bef050 Don't fail the sync completely when a remote file does not exist. 2021-05-05 15:59:00 -04:00
Kelly McDonald
cbd1d01203 Add URL to the study_info('documents') script 
fixes #321 - I merged in branches that fix #320 and #297

320-add-default-for-file-data-get
297-filename-in-documents
 2021-05-05 11:30:08 -04:00
Dan Funk
8b0afa4437
Merge pull request #304 from sartography/irb-info-script-307 
Irb info script #307
 2021-05-04 11:40:52 -04:00
Dan Funk
34759a2f3d
Merge branch 'dev' into feature/performance-refactor 2021-05-04 11:30:13 -04:00
Dan Funk
d6054a9846
Merge branch 'dev' into 310-task-event-timezone 2021-05-04 11:21:36 -04:00
Dan Funk
81467d6a8d
Merge pull request #299 from sartography/297-filename-in-documents 
Add filename to files listing.
 2021-05-04 11:19:59 -04:00
mike cullerton
804926dbac Fixed problem where WorkflowService.make_test_workflow did not add a study to the workflow_model 2021-05-01 15:55:20 -04:00
mike cullerton
22b3230243 Added service get_irb_info to crc.services.protocol_builder.ProtocolBuilderService 
Added environment variable `PB_IRB_INFO_URL` for new `get_irb_info` service
 2021-05-01 15:20:47 -04:00