5692f7d377
Merge pull request #359 from sartography/413-LibraryCleanup
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413 library cleanup
2021-08-18 13:39:37 -04:00
b4ecb0f97a
Add backref cascade and make changes to the spot where we delete so it loads objects into memory and then uses the SQLAlchemy plumbing to make sure that the db object gets cleaned up.
2021-08-18 08:25:17 -04:00
032aad9bc4
Fixes #383 - Timestamp on files is UTC?
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also this includes the shield test thing for the boolean_type property whoopsie
2021-08-17 13:04:24 -04:00
1f82143aea
Remove HSR Number from models
2021-08-16 12:50:09 -04:00
46d7b13326
Start to remove HSR Number
2021-08-16 12:09:02 -04:00
848c2e622f
Always use a schema to define what is being returned, it enforces consistency of the API and internally we can depend on well defined objects.
2021-08-10 16:16:08 -04:00
913c12c02d
Merge branch 'dev' into bug/pi_name_missing_246
2021-08-10 15:06:52 -04:00
41ad7935f8
Merge branch 'dev' into 367-Call-Activity
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# Conflicts:
# Pipfile.lock
2021-07-29 09:28:21 -04:00
b857fddbad
commit in intermediate changes to work on a bug
2021-07-26 13:00:11 -04:00
48516e4009
Parent side working
2021-07-22 10:23:05 -04:00
2455495457
got library side working - still need to have parent working
2021-07-22 10:20:34 -04:00
4632c6374f
Merge branch 'dev' into bug/missing_pi_name_246
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# Conflicts:
# crc/api.yml
# crc/services/study_service.py
2021-07-20 11:44:11 -04:00
b0cf74fa3d
Merge branch 'dev' into add-by-user-61
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# Conflicts:
# tests/files/test_files_api.py
2021-07-07 10:46:50 -04:00
c11b5cfb29
Add user_uid to api output
2021-07-07 08:18:02 -04:00
23be257db0
Add user_uid column to file_data table
2021-07-06 17:07:47 -04:00
cafdc4d100
Removing an unneeded modification to the database structure for lookup tables.
2021-07-06 14:02:07 -04:00
1b1a994360
Refactoring Reference files to use the lookup table, rather than parsing the results directly out of the spreadsheet, or attempting to cache them.
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Adding a DocumentService to clean up the FileService, and get Documents well seperated, as it seems likely be pulled out or seperated in the future, there is now a Documents api file as well, for the same reason.
Some other minor changes are just fixing white space to assure our code is linting correctly.
I removed _create_study_workflow_approvals from the base test, as we don't use approvals like this anymore.
2021-07-06 13:10:20 -04:00
dce1d86e93
commit changes before looking at something else
2021-07-06 10:34:57 -04:00
61ad371680
Clean up the file api so we don't have a bunch of extra stuff in there. Just include the raw data from the document spraedsheet if it is available.
2021-06-22 15:08:08 -04:00
1f3febe2df
Fix the panda warnings, which means we only support xlsx files now.
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Include the document details when reutnring a file from the file model.
Improve the validation of file form elements.
2021-06-22 14:58:52 -04:00
07eb3f9ca8
Moving metrics into SpiffWorkflow so we can run the performance metrics deeply across both systems simultaniously.
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Upgrading libraries.
Fixing deprication issue with Pandas and numpy.
We can only process xlsx files now, plain oldschool xls is fully removed.
2021-06-18 16:41:55 -04:00
586a0f2f1a
Merge pull request #325 from sartography/feature/file_refactor
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Prefer tasks that share a parent over just the the next available tas…
2021-06-08 11:28:23 -04:00
59f605c3df
Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor.
2021-06-08 08:03:14 -04:00
2e3d8c7343
Fix for DataStoreSchema missing the file_id column.
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The file_id column is a foreign key.
2021-06-01 13:51:10 -04:00
a1bb30e689
Switching from using "default" to "server_default" for all default time settings, and running migrations so that this is set at the database level rather than in python, to hopefully correct some issues with dates being 4 hours in the future. Having a very hard time replicating this issue locally.
2021-05-14 12:28:50 -04:00
34759a2f3d
Merge branch 'dev' into feature/performance-refactor
2021-05-04 11:30:13 -04:00
d6054a9846
Merge branch 'dev' into 310-task-event-timezone
2021-05-04 11:21:36 -04:00
77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
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Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
a719cf4bf9
When retrieving the study, only update the status of underlying workflows if specifically requested.
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Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
24c818bf31
Added study_id to workflow_api
2021-04-29 14:29:21 -04:00
c029dad688
Convert some datetime columns to include timezone
2021-04-28 10:00:22 -04:00
21e95b106d
Merge pull request #295 from sartography/299-document-datastore
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Add file_data_get and file_data_set functions that can be accessed in…
2021-04-26 12:49:46 -04:00
047c68b2b5
Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models
2021-04-26 12:31:22 -04:00
39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204
2021-04-26 10:27:32 -04:00
40ee20ecca
Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
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Fixes #299
2021-04-26 09:55:28 -04:00
22432aaf2c
study_id is no longer required for task events
2021-04-26 08:36:09 -04:00
c0655c9d03
Added `standalone` column to workflow_spec
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Added `user_id` column to workflow
2021-04-26 08:33:55 -04:00
ecff7d20d3
Adding a test for the new endpoint and cleaning up the API documenation
2021-04-21 14:00:19 -04:00
e2197ddab9
Changes to support the frontend data pane
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fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
d7894f43b6
These changes relate to changes in PB Mock ticket 273, where we removed Q_COMPLETE as a column in the PB Mock Study table. It is now a relationship.
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Here, we removed Q_COMPLETE from ProtocolBuilderStudy and ProtocolBuilderStudySchema definitions to accommodate the PB Mock changes.
***This push will need to be coordinated with ticket 273***
2021-04-02 12:01:00 -04:00
b64b52e7cb
Assure that we properly return the new status message over the api calls.
2021-03-26 19:47:31 -04:00
a08c6b794f
Updated Study Associate Endpoints
2021-03-22 17:30:49 -04:00
1000b22a3b
Don't raise errors on non-ready tasks that calculate a title, the information may not be avaiable yet.
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Also Allow autocomplete-num as a valid field property.
2021-03-12 15:40:23 -05:00
9e758c57d3
Merge branch 'dev' into bug/225_enum_lookup_same_field_name
2021-03-02 14:15:58 -05:00
06dedd8a32
Add short_title to study, change update_study task to use kw arguments and add the short_title to the update_study script
2021-03-02 10:03:53 -05:00
aac3d5c16e
Bug #255 , this requires the front end to pass in the name of the task, when doing a lookup. This will prevent a bug where we have multiple user tasks, with enum fields that set the same variable, but use different lookup tables to populate the dropbown or search feature.
2021-03-01 14:54:04 -05:00
c795dd7aea
Merge branch 'dev' into 206-extend-study-access
2021-02-24 12:16:35 -05:00
3dbe39c6fe
initial checkin of changes for branch
2021-02-24 12:05:06 -05:00
349c3d657a
Merge branch 'dev' into 201-changes-to-in-progress
2021-02-22 18:17:59 -05:00
53fa49e668
Merge pull request #243 from sartography/183-remove-study-approval-code
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Remove Approvals per ticket 183
2021-02-22 18:12:02 -05:00
Mike Cullerton
Kelly McDonald
Leashys
mike cullerton
Dan
NWalker4483