2374400542
Automatically set the first workflow for a workflow_spec to primary
2021-04-15 12:39:12 -04:00
3332b9c7c0
Added delete_files argument to the restart_workflow api method, and pass it along to WorkflowProcessor.reset
2021-04-15 11:23:20 -04:00
949f3be403
give an endpoint to return all files associated with a study
2021-04-12 12:23:33 -04:00
14386b8ba9
Merge pull request #264 from sartography/bug/243_complete_all
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Bug/243 complete all
2021-03-14 12:34:55 -04:00
6f80d816cd
My privous efforts didn't take into account the fact that we use dot notation in field names.
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I've re-worked the workflow form endpoint, so that it only accepts the data that should be in the form, and ignores any other values that come back from the front end. It seems Formly has some bugs that were introducing confusing information, and I want everything to behave consistently.
I had to re-work some of the tests, which were relying on an ability to set data through a form post without having a corresponding form to do so.
2021-03-14 12:20:39 -04:00
15c64c862e
Adding an argument to update task that will allow it to complete all remaining tasks through an "update_all" flag,
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this will allow us to remove some fairly complex logic from the front end that isn't behaving properly.
2021-03-12 20:41:07 -05:00
ef26238127
added CustomBPMNScriptEngine back in
2021-03-11 14:33:35 -05:00
e7c78c8d0e
Merge branch 'dev' into study-associated-email-207-223
2021-03-11 12:38:47 -05:00
80f1fc276f
Modify api.tools.send_email to accommodate the changes to the api endpoint in api.yml
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We now accept subject, address, body (the email message), and possible data.
We now use email_service to send the message, and wrap it with the CR Connect html formatting.
**** We import DEFAULT_SENDER from config.default. Will this be a problem on testing and production? ****
2021-03-11 11:19:02 -05:00
576aebab19
Sometimes a workflow can be completely broken and unloadable. For instance, it starts off with a engine step / script task that will not execute. So the failure happens the second it is processed. When calling reset on a workflow, we should catch the failure, and reset the workflow, so we aren't trapped in an unrecoverable state.
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To do so, I changed the WorkflowProcessor's reset method to be static, it will try to instantiate the current workflow and execute a cancel_notify event, but if that fails, it will continue and always return a new workflow processor using the latest spec.
2021-03-09 11:52:55 -05:00
291216e081
Fixing a bug that prevented proper evaluation of a enum field where the default value was null or empty.
2021-03-08 14:00:03 -05:00
9e758c57d3
Merge branch 'dev' into bug/225_enum_lookup_same_field_name
2021-03-02 14:15:58 -05:00
572eb3457a
Merge pull request #252 from sartography/customer-error-messages-192
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Customer error messages 192
2021-03-02 13:45:38 -05:00
aac3d5c16e
Bug #255 , this requires the front end to pass in the name of the task, when doing a lookup. This will prevent a bug where we have multiple user tasks, with enum fields that set the same variable, but use different lookup tables to populate the dropbown or search feature.
2021-03-01 14:54:04 -05:00
9d804c36d5
Merge branch 'dev' into customer-error-messages-192.
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Needed some sql changes from dev
2021-03-01 10:29:10 -05:00
c795dd7aea
Merge branch 'dev' into 206-extend-study-access
2021-02-24 12:16:35 -05:00
3dbe39c6fe
initial checkin of changes for branch
2021-02-24 12:05:06 -05:00
349c3d657a
Merge branch 'dev' into 201-changes-to-in-progress
2021-02-22 18:17:59 -05:00
53fa49e668
Merge pull request #243 from sartography/183-remove-study-approval-code
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Remove Approvals per ticket 183
2021-02-22 18:12:02 -05:00
4fc2929356
Put the preamble back in to the error message.
2021-02-19 15:57:01 -05:00
4fa0f9720a
Allow frontend to honor 'view as' and fix problem with tests
2021-02-18 11:25:17 -05:00
6fbaecf9b2
Change selection to include task events that are for someone else, but are on a study I own.
2021-02-18 08:09:13 -05:00
003bf2f9b9
Remove Approvals per ticket 183
2021-02-16 09:05:29 -05:00
39eb5c5c21
This is a decent beginning framework for customer error messages.
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It is not complete, but is in a state where we can start to interact with the front end.
Two tests are failing.
Committing so I can work on an error for Alex.
2021-02-12 14:18:42 -05:00
c44e784eb2
Fixing a bug with the user model.
2021-02-12 09:48:41 -05:00
7eeb491dfa
User str decode Removed
2021-02-12 09:30:18 -05:00
8a2a8b1443
Still not in working order. Committing to work on another ticket.
2021-02-10 12:28:59 -05:00
3e32cdedc4
New error handler for non Api errors. Ticket 187
2021-02-09 16:35:57 -05:00
fa34bee18a
First commit for cleaning up error messages for customers.
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This is *not* in a working state.
Committing this so I can work on another ticket.
2021-02-04 11:23:05 -05:00
effd11f947
Merge pull request #231 from sartography/cancellations-137
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Cancellations 137
2021-02-03 16:31:18 -05:00
1eba20f420
Merge pull request #229 from sartography/workflow-spec-order-74
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Workflow spec order 74
2021-02-03 16:18:34 -05:00
c5cf3ea7ff
Changed call to WorkflowProcessor.reset to reflect change from class method to instance method.
2021-01-29 14:34:09 -05:00
7e76639cf3
When a study is put on hold, we now reset workflows and call any pending cancel_notify events.
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In api.study.update_study we test the study status and call the new WorkflowService method process_workflows_for_cancels.
In services.workflow_service we added the new method process_workflows_for_cancels. It loops through workflows for a study, and resets them if they are in progress.
In services.workflow_processor, we changed the reset method to be an instance method so we can call self.cancel_notify.
In tests.test_lookup_service we changed the call to WorkflowProcessor.reset to reflect the change from class method to instance method
2021-01-29 14:05:07 -05:00
c99a388405
We now set the display_order automatically. Users can modify order using the arrows.
2021-01-27 09:50:29 -05:00
5921ce9f10
Merge branch 'dev' into 152-workflow-spec-pull
2021-01-21 12:30:43 -05:00
5b13195182
Merge pull request #224 from sartography/restart-with-no-data-99
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Restart with no data 99
2021-01-20 17:22:18 -05:00
9c71a503ca
Python code for new restart_workflow api endpoint. Cleaned up code and docstring in get_workflow to match.
2021-01-19 15:09:20 -05:00
6a9e6d3570
Restart workflow without form data. Committing so Dan can check it out
2021-01-14 15:32:14 -05:00
cf7990ce85
Refactor for better readability due to code smell test
2021-01-12 08:54:32 -05:00
e14b896225
Add documentation
2021-01-11 09:31:08 -05:00
f282a9ef73
Make sure that top_level_workflow is transferred over, also include reference files in the list of files to sync
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We may want to revisit this because I used a 'Magic' workflow_ref_id of 'REFERENCE_FILES' as a special case so I could re-use most of what I already had. This works well, but we may want to structure it different.
2021-01-11 09:21:44 -05:00
26655b26d3
merging in dev, and fixing a failing test from dev.
2021-01-08 14:42:13 -05:00
72a73c1fc4
Allow for synch to work even if the local set of workflow specifications are completely empty.
2021-01-08 13:23:01 -05:00
e5a38874f6
A hard or soft reset should also cause a 'cancel_notify' which will kick off any CANCEL events. If this happens during
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a hard or soft reset, and an error is thrown trying to fulfil a cancel event, the reset should still fire.
Sending emails still had a number of issues correctly parsing it's arguments. This is corrected.
2020-12-29 18:05:13 -05:00
6cfce839c1
Validation now assures that we won't encounter errors when generating navigation lists.
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Fixing workflow sync paths that were incorrect.
Repairing a suddenly failing test in files, that just don't make no sense.
Bumping spiffworkflow that contains a fix for issue #155
2020-12-28 17:33:38 -05:00
1f9bf72c59
Merge branch 'dev' into bug/navigation
2020-12-14 11:46:44 -05:00
4268d0f482
Merge pull request #208 from sartography/152-workflow-spec-pull
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152 workflow spec pull
2020-12-14 11:35:06 -05:00
b62a9c7074
Merge remote-tracking branch 'origin/dev' into bug/navigation
2020-12-14 10:40:21 -05:00
ee3ee9fd4a
Added tests to cover most of the use cases and code, and a bunch of stuff to make the mocks happy
2020-12-14 10:27:40 -05:00
856fe445b0
Added user.uid to ApiError and Sentry logging
2020-12-11 16:26:03 -05:00
adc4dc4453
redid the api a bit so that nothing was using open security - added a new endpoint for getting a workflow spec that uses the alternate API_TOKEN security and leave the original endpoint as it was.
2020-12-11 12:03:41 -05:00
3a1160efac
refactored calls into a service
2020-12-11 11:41:32 -05:00
9eea26e019
add workflow_sync test
2020-12-11 08:34:59 -05:00
3f56dfe484
Move all workflow sync stuff into new file
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Make changes to api naming scheme
add some error checking around endpoints for missing/invalid endpoints
2020-12-10 10:46:23 -05:00
a8203ed01d
save changes before refactor
2020-12-10 10:06:21 -05:00
c57b17df1e
Add a robust way of adding an API key, update examples and documentation for swagger API and add the ability to completely sync the local system from the remote system.
2020-12-09 12:13:17 -05:00
0e1aa59fa1
Make a change to make sure that if there is a new file locally that is not present remotely when we pull from the remote, the new local file gets deleted.
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Also: add several things to the requirements.txt that should have been there in the first place.
2020-12-08 13:42:01 -05:00
44c72115ae
Make sure we get the file we intended
2020-12-07 08:50:20 -05:00
f26a8615a4
Get more file details so we can fill out everything locally and also add a method to download the file by md5_hash
2020-12-07 08:49:38 -05:00
93b12a8e82
updates using new navigation from spiff workflow's navigation branch, all tests passing.
2020-12-04 17:56:12 -05:00
cad613cf63
Fix problem when method is run for a workflow that is non-existant locally
2020-12-04 12:00:02 -05:00
d41d018fe3
For a given workflow - find the files that are different from a remote endpoint for the same workflow
2020-12-04 11:49:07 -05:00
3e8d4ca7c9
Add some inline documentation to make the process more clear
2020-12-04 10:23:03 -05:00
10dce542ec
documentation change
2020-12-03 15:27:45 -05:00
0f59d3de09
add endpoint that gets a record for all changed /new workflow_specs at a remote endpoint
2020-12-03 14:45:57 -05:00
bcb45a59c8
allow cors
2020-12-03 08:46:34 -05:00
0e8913434a
refactor a bit
2020-12-03 08:44:15 -05:00
92aa1b971d
commit before removing big long SQL
2020-12-02 16:04:00 -05:00
e0c28cbc7d
Make it easer to start things up.
2020-12-01 11:17:07 -05:00
b8a91a513b
Merge pull request #196 from sartography/128-data-store
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128 data store
2020-11-18 18:55:33 -05:00
b83ab1bcd1
Move data store base into its own file.
2020-11-18 15:34:50 -05:00
16313609ec
removed call to signal (changed to cancel_notify)
2020-11-18 13:55:30 -05:00
72ade3c367
Add crosstalk test
2020-11-17 10:29:49 -05:00
a2dc3c4812
Use Cancel Event
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New title 'New Title'
2020-11-16 09:59:22 -05:00
70425eee0d
Add last_updated field - change the api signature to be closer to what we need going forward, but retain the old methods for testing the script get/set through the API
2020-11-13 12:03:29 -05:00
7c2c725840
save before changing how API works
2020-11-13 09:58:21 -05:00
9a4d167dcd
Add in api changes
2020-11-11 09:44:58 -05:00
a78af4eab8
Run cancel task during interrupt. Currently this uses Signal event. We may change this to the Cancel event.
2020-11-04 14:37:53 -05:00
182e375fdc
Adds a test for string manipulation
2020-08-21 13:46:10 -04:00
66e49a347a
Minor tweaks to the eval endpoint, which should take both the expression and the data as one data structure.
2020-08-20 16:13:48 -04:00
d4c5e297cc
Merge remote-tracking branch 'origin/dev' into fix/delete_workflow_endpoint
2020-08-17 15:09:11 -04:00
85ad477b2b
Some minor cleanup on the study status and automatic events. I wanted to avoid having one database model automatically generating other database models as a side effect. The study service now has full responsiblity to recording study events.
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To help in running tests, adding __init__.py methods to all the test directories.
2020-08-17 14:56:00 -04:00
369fe4bb35
Automatic events refactoring
2020-08-14 08:36:46 -06:00
aa010272cc
Automatic event creation in study creation
2020-08-14 08:36:10 -06:00
56b161a234
Fixing the failing tests by passing in workflow.id rather than workflow to the delete workflow endpoint
2020-08-10 13:51:05 -04:00
cd9376cf8e
Adding back ability to update studies
2020-08-04 09:13:24 -06:00
50b207307a
Merge branch 'dev' into feature/update_study_status_latest
2020-07-31 14:26:24 -06:00
5d23223e51
New study status update
2020-07-30 21:03:11 -06:00
f8944da31f
Merge branch 'dev' into feature/admin_impersonations
2020-07-30 13:01:46 -04:00
faba0f55ab
Adds AdminSession model and refactors impersonation methods to use it.
2020-07-30 12:40:53 -04:00
31982f81ae
Merge branch 'dev' into feature/documents_publishing
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# Conflicts:
# Pipfile.lock
2020-07-30 10:17:08 -04:00
d301e9e6fa
Adds list_users endpoint. Adds admin impersonate uid parameter to user endpoint. Adds some utility methods to user service. Refactors authentication tests.
2020-07-29 22:47:47 -04:00
f897ee3aea
Merge branch 'feature/approvals_dashboard_prototype' into feature/admin_impersonations
2020-07-29 10:32:46 -04:00
0ea4c13d09
Convert protocol builder status to always be in lower case in order to better match the front end. And also fixing an issue with the multi_instance that is oddly broken suddenly, and I don't know why.
2020-07-28 17:16:48 -04:00
4d11fc04a0
dropping the "read_only" flag in favor of a "do_engine_steps" flag, which more clearly defines what is happening.
2020-07-28 13:51:29 -04:00
f15626033d
Allow the workflow to be requested without making changes to the workflow - requires that you specify a read_only flag of true, otherwise it assumes that you want a fully prepared workflow with the next ready task set to run.
2020-07-28 13:33:38 -04:00
300026cbc8
Expanding the task events endpoint to accept workflow and study ids as additional filters.
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Removing events from the study endpoint, too noisy.
2020-07-28 10:16:48 -04:00
452f2c3723
Building out a user service for getting the current user, it will provide a number of functions, one of which will allow administrative users to impersonate other users in some circumstances (but will assure that we log events correctly when an impersonation occures)
2020-07-27 14:38:57 -04:00
824582dab1
Hot fix to correct for a failing test due to updates in Spiffworkflow library,
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and modifying the token authorization so that we can log in as different users when not in production mode.
2020-07-27 11:25:29 -04:00
acb43cc271
Removing an unused function and addign a fix me.
2020-07-22 11:40:49 -04:00
mike cullerton
Kelly McDonald
Dan Funk
Mike Cullerton
Nile Walker
Aaron Louie
Carlos Lopez