9097851ae1
We now store type as a string, not an Enum
2022-04-15 10:23:00 -04:00
ba2eef0ec9
Fixing failing tests
2022-04-14 18:07:23 -04:00
389d2b413e
More work on igrations
2022-04-14 18:06:08 -04:00
70beba164b
Merge branch 'dev' into file-refactor-705
2022-04-14 16:11:53 -04:00
a21aea3348
Fixed a bug where we tried to delete a record that did not exist
2022-04-14 15:37:05 -04:00
b304b4725b
Merge branch 'dev' into file-refactor-705
2022-04-14 11:40:08 -04:00
be24b598b8
Fix call to set_data_common - no longer have workflow_spec_id, add type of data set
2022-04-13 18:03:23 -04:00
076eb8747f
Finish bug fix for deleting data_stores when value is None or empty string
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Cleanup:
- Make sure workflow_spec_id has a value
- Change extra if conditionals to elif conditionals
2022-04-13 18:01:52 -04:00
72f9ac33d0
Consolidate data_store scripts
2022-04-13 17:57:22 -04:00
916daf002c
Clean up parameters for set_data_common
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Use key, value instead of args[0], args[1]
2022-04-13 13:48:35 -04:00
efc37ee59f
Prepare for migrating data_stores
2022-04-13 08:52:22 -04:00
a32f9a9458
Fix url link
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This is a temporary fix. Unsure where it will end up
2022-04-13 08:51:33 -04:00
b1dca3f212
FileModel => DocumentModel
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Remove unused imports
2022-04-13 08:34:10 -04:00
c090a300c4
form_field_key => irb_doc_code
2022-04-13 08:33:01 -04:00
216c15ed1c
FileModel => DocumentModel
2022-04-13 08:15:23 -04:00
b455b73c7b
Don't freak out if there are not files to delete.
2022-04-12 14:43:34 -04:00
b732fee675
Merge branch 'dev' into file-refactor-705
2022-04-12 14:01:49 -04:00
04ed735843
*** WIP ***
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Temporarily move file api calls to file_refactor
Not sure how this will end up - maybe a Documents section
2022-04-12 13:58:37 -04:00
b7ee50a17f
*** WIP ***
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Many changes related to FileModel => DocumentModel
2022-04-12 13:56:54 -04:00
fdea2d0cbc
Remove unused imports
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Added TODO about imports for crc.models.workflow that aren't correct. I believe this was for files to the file system refactor, and we don't actually use this.
2022-04-12 13:55:35 -04:00
7d62c2dd18
FileModel => DocumentModel
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from_models => from_document_model
2022-04-12 13:51:09 -04:00
3f97de6430
from_models => from_document_model
2022-04-12 13:50:26 -04:00
f8d6f0a6da
No need for separate call to get file data
2022-04-12 13:50:04 -04:00
0e5dcccfca
Remove unused imports
2022-04-12 13:46:05 -04:00
3be67a8bd9
FileModel => DocumentModel
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Also, type is no longer an Enum field, no need to grab type.value
2022-04-12 13:44:58 -04:00
0c313f44b2
FileModel => DocumentModel
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Don't need separate call for data
2022-04-12 13:43:00 -04:00
aa52b7b790
FileSchemaRefactor => FileSchema
2022-04-12 13:39:48 -04:00
bee58ec6d7
Coding style stuff
2022-04-12 13:38:38 -04:00
0e3b467091
Modified FileSchema to match the new File
2022-04-12 13:38:12 -04:00
22b3c8547f
FileModel => DocumentModel
2022-04-12 13:33:24 -04:00
525491921f
from_models => from_document_model
2022-04-12 13:32:33 -04:00
09e259f554
Moved file api methods to file_refactor
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This is temporary
Not sure where they will end up
2022-04-12 13:31:33 -04:00
89ab55ce6b
Removed unused imports
2022-04-12 13:28:49 -04:00
556af3c425
Removed FileModel, FileDataModel imports
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Added DocumentModel
2022-04-12 13:28:04 -04:00
7c23d36d7c
Add DocumentModel that combines FileModel and FileDataModel
2022-04-12 13:23:50 -04:00
bf898993c4
Merge pull request #514 from sartography/get-irb-info-issue-702
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Get irb info issue #702
2022-04-12 08:14:14 -04:00
e9ea95d1d7
The IRB Info API endpoint can return a dictionary--if the study is **not** yet uploaded, or a list with 1 dictionary if the study **is** uploaded
2022-04-07 14:38:32 -04:00
d04b447c8c
Update data stores, rather than creating new ones
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Delete 'extra' data stores
2022-04-05 18:15:58 -04:00
6694dc6cb3
Merge pull request #510 from sartography/git-error-filenotfound-690
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Git error filenotfound #690
2022-04-04 16:53:36 -04:00
095105e3e6
Merge pull request #508 from sartography/validation-with-data-store-396
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Validation with data store #396
2022-04-04 16:51:57 -04:00
e1f9dcded5
Assure we can associate the same person with a workflow under two different roles.
2022-04-04 16:01:48 -04:00
dd26f8fef7
Update review types
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Remove review types 23, 24
Add review type 21
2022-03-30 10:29:53 -04:00
ae66934bf9
Fix bug where we tried to add files to the index that were removed from the repo
2022-03-29 09:49:05 -04:00
9ec1514267
Merge pull request #509 from sartography/chore/zip-file-update-688
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Chore/zip file update #688
2022-03-29 09:41:32 -04:00
6ff0cdbb9d
Merge pull request #507 from sartography/bug/validating_data_security
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Bug/validating data security #684
2022-03-29 09:41:02 -04:00
f92f9d64ea
Allow users to pass a `doc_code` to get_zipped_files script
2022-03-28 11:59:10 -04:00
4abdc4920f
There was a problem if validate_study_id was 0 (zero). It evaluated to False
2022-03-25 10:04:05 -04:00
5229cf457e
Modify scripts to use the changes in data_store_service validate methods
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Make sure we return values in the validate methods
Minor cleanup
2022-03-25 10:03:12 -04:00
8c88de35cd
Modify get_validate_common and set_validate_common methods to use the temporary validate_data_store list
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In get_validate_common, we first look in validate_data_store, then in the real data_store. This allows us the flexibility to use temp values for current workflow or real values set by previous workflows.
Also, lots of cleanup:
- we didn't use the dictionary returned by the set_data_common method, so removed it and only return the value we set.
- this allowed us to delete the `overwritten` method and some other code.
- renamed some variables to better represent what we are doing
2022-03-25 10:01:31 -04:00
5bf114b605
Initialize `validation_data_store` as empty list
2022-03-25 09:50:31 -04:00
mike cullerton
Dan
Mike Cullerton