Dan Funk
906bacff6a
Expose a flag on the workflow model in the api to shown if it is using the latest spec. Added a soft_reset and hard_reset onto the workflow endpoint that will allow you to cause a hard or soft reset.
2020-03-05 16:45:44 -05:00
Dan Funk
7b21b78987
Workflow Processor will deserialize workflows using the version of the BPMN files used during creation, but allows for both a soft and hard reset - soft resets will use the new workflow without a restart and will retain full history. A hard-reset will restart the workflow from scratch, but will retain the data from the last completed task. Workflows have a complex version number associated with them that is used during the deserialization to find the correct files.
2020-03-05 15:38:30 -05:00
Dan Funk
697d930eab
Modify the workflow processor to accept a workflow model - so it can take on more of the responsibilities of updating this model and managing versions.
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Changing the version information so that it includes the numbers of the files used to generate the serialized workflow.
2020-03-05 13:25:28 -05:00
Dan Funk
70611e2c1d
Adding the version of the specification used to create a workflow to the workflow api endpoint. Though the exact content of this version is likely to change.
...
Split the API specific models out from the workflow models to help me keep this straight.
Added tests to help me understand the errors thrown the and resolution path when a workflow specification changes in the midst of a running workflow.
2020-03-05 11:18:20 -05:00
Dan Funk
78b6f040eb
Add the ability to forcibly restart a workflow, while retaining that workflows data.
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A workflow specification knows it's version number, which is generated by the version of the files that make it up.
A workflow specification version number is the primary file (the lead BPMN) followed by a consistency ordered version each extra file associated with the workflow. A change in any file modifies the specifications version.
2020-03-04 17:08:45 -05:00
Dan Funk
c5cee4761e
Improve version handling of files. Consolidate more of this logic in FileService. Place the version on the actual data model, not the file model, so the file model remains the same, and we just version the data associated with it.
2020-03-04 13:40:25 -05:00
Dan Funk
94f828dfd6
Adding a simple endpoint that describes what scripts are currently available, along with a brief description.
2020-03-03 15:30:42 -05:00
Dan Funk
7194d7d374
Standardizing the script tasks that can be executed on the server, adding tons of error messages for when things go wrong. All scripts must exist in side of the crc/scripts directory.
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Adding a new script that script tasks can use to add in data about the study.
Moving all the test workflow specifications out of the main load.
fixing a pile of tests so they can find workflow specs that are now moved into the test directory.
2020-03-03 13:52:45 -05:00
Aaron Louie
f7416065da
Merge remote-tracking branch 'origin/master'
2020-03-02 13:16:43 -05:00
Aaron Louie
a24b67d5db
Updates DSP BPMN
2020-03-02 13:16:36 -05:00
Aaron Louie
b0c4996fb3
Populates documentation.
2020-03-02 13:14:03 -05:00
Dan Funk
5e3fdaaa94
New set of "Tools" api endpoints, that provides a way to quickly render markdown or word documents by uploading json data and a template to populate.
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Improved Error messages / Error processing. You can now just throw an APIError anywhere, and it will be properly serialized and returned.
2020-02-29 17:22:38 -05:00
Aaron Louie
5f944af0d7
Adds CR Connect training workflow specs
2020-02-28 15:39:44 -05:00
Aaron Louie
8611a23ad3
Renaming to snake case for consistency
2020-02-28 11:54:11 -05:00
Aaron Louie
f4a0c32cec
Fixes path to testing config file
2020-02-28 11:33:08 -05:00
Aaron Louie
dc53939eb1
Merge remote-tracking branch 'origin/master' into feature/protocol-builder
2020-02-28 11:17:17 -05:00
Aaron Louie
4534b0c2df
Updates study model to better match Protocol Builder. Deletes all migrations and starts over, since Alembic has problems migrating changes to existing column constraints.
2020-02-28 11:14:30 -05:00
Aaron Louie
0cc59d0974
Adds study inactive flag. Sets study to inactive if not found in Protocol Builder.
2020-02-27 11:17:58 -05:00
Aaron Louie
f3068e68db
Adds user to example data. Requires login before adding/updating a study.
2020-02-27 10:30:16 -05:00
Aaron Louie
27d7afb656
Adds Protocol Builder models and schemas. Reorganizes and cleans up some files.
2020-02-27 09:54:46 -05:00
Aaron Louie
3ef4860391
Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database
2020-02-26 18:06:51 -05:00
Dan Funk
c6eb2d937d
Enable autoescape security feature for processing markdown data in descriptions from the BPMN Diagrams
2020-02-25 16:21:47 -05:00
Dan Funk
1e8a095760
Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.
2020-02-25 12:01:25 -05:00
Aaron Louie
002207cbca
Adds redirect URL to login handler
2020-02-24 16:59:16 -05:00
Aaron Louie
443d38a9a1
Prevents duplication of study on update.
2020-02-21 11:24:51 -05:00
Aaron Louie
eb6354db6e
Moves sso_backdoor parameters to query string. Prevents duplication of user on update.
2020-02-21 11:24:39 -05:00
Aaron Louie
9f4301712e
Merge remote-tracking branch 'origin/master'
2020-02-20 17:23:17 -05:00
Aaron Louie
a6e0809183
Adds SSO attributes. Prevents uid duplication errors.
2020-02-20 17:23:10 -05:00
Dan Funk
d3c51af1f5
Merge branch 'master' of github.com:sartography/cr-connect-workflow
2020-02-20 16:04:44 -05:00
Dan Funk
af35f182f6
Random Fact updated with a markdown set of examples
2020-02-20 16:04:38 -05:00
Aaron Louie
0cda7c66e5
Merge remote-tracking branch 'origin/master'
2020-02-20 15:43:34 -05:00
Aaron Louie
581434b453
Adds SSO header attributes
2020-02-20 15:43:29 -05:00
Dan Funk
a94596112d
Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.
2020-02-20 14:35:21 -05:00
Dan Funk
2cc6010c8d
Protocol builder connections
2020-02-20 13:30:04 -05:00
Dan Funk
1a9b5b50e5
Merge branch 'master' of github.com:sartography/cr-connect-workflow
2020-02-18 16:39:11 -05:00
Dan Funk
a642593e3d
Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly.
2020-02-18 16:38:56 -05:00
Aaron Louie
6075a32d07
Edits default value
2020-02-18 10:17:14 -05:00
Aaron Louie
16db1e3504
Adds default_value to Task schema
2020-02-18 10:14:03 -05:00
Aaron Louie
5a53ddb88c
Fixes vulnerability identified by SonarCloud
2020-02-12 11:07:01 -05:00
Aaron Louie
5f461d9e87
Fixes FactService
2020-02-11 22:13:46 -05:00
Aaron Louie
b0b1a6e5e8
Saves form field key
2020-02-11 15:03:25 -05:00
Aaron Louie
0a3a932c50
Comments out study workflow for now. Fixes failing unit tests.
2020-02-11 13:40:14 -05:00
Aaron Louie
0ef1a178ed
Merge branch 'master' into feature/crc_demo_workflows
2020-02-11 13:30:57 -05:00
Aaron Louie
f58ed5b6ee
Adds another user task at the end
2020-02-11 12:14:10 -05:00
Dan Funk
709bae76b2
Removing a rogue comma that was causing havoc. Also, don't fail if a mock already exists in the test database.
2020-02-11 11:11:21 -05:00
Dan Funk
879a248002
Adding a test to assure the file creation occurs as expected via the API.
2020-02-10 20:54:22 -05:00
Aaron Louie
359fb4a2f3
Adds draft demo workflow specs
2020-02-10 17:19:11 -05:00
Aaron Louie
f128e7206b
Adds placeholder scripts for testing
2020-02-10 17:18:51 -05:00
Dan Funk
9f0eb8477a
Fix for a bug in the File service where it was being overly restrictive.
2020-02-10 16:27:57 -05:00
Dan Funk
1d24ebe382
Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level.
2020-02-10 16:19:23 -05:00
