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cr-connect-workflow
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1688 Commits

Author SHA1 Message Date
mike cullerton 6c98e8a2f4 removed duplicate code 2021-04-26 08:47:03 -04:00
mike cullerton 077b68c1e2 When creating a workflow for a study, set the user_id to None 2021-04-26 08:46:19 -04:00
mike cullerton f17a9dc0f4 Modified `get_users_assigned_to_task`. 
If we are running a standalone workflow, only return the current user.
 2021-04-26 08:45:08 -04:00
mike cullerton b6f5001687 Added methods for the 2 new api endpoints 2021-04-26 08:43:14 -04:00
mike cullerton 1f50bdcb81 Migration script for database changes 2021-04-26 08:36:56 -04:00
mike cullerton 22432aaf2c study_id is no longer required for task events 2021-04-26 08:36:09 -04:00
mike cullerton c0655c9d03 Added `standalone` column to workflow_spec 
Added `user_id` column to workflow
 2021-04-26 08:33:55 -04:00
mike cullerton fa818bd751 Code for the 2 new api endpoints 
Also modified `update_task` so that it no longer requires a study_id
 2021-04-26 08:31:12 -04:00
mike cullerton 5936b2e8ef Created 2 api endpoints; one to get a workflow from a workflow spec, and one to list all standalone workflow specs. 
Also added `standalone` argument to workflow_spec schema properties
 2021-04-26 08:27:24 -04:00
Dan dd7c5fd1c1 Fixes #306 assure that we take the doc_code into account if passed in as an argument to the API for get_files. 2021-04-23 16:16:19 -04:00
Dan Funk 63dcb4599e
Merge pull request #292 from sartography/277-Document-pane 
277 document pane
 2021-04-21 17:28:41 -04:00
Dan cf051a7d4f Merge branch 'dev' into 277-Document-pane 
# Conflicts:
#	crc/api/file.py
 2021-04-21 14:09:44 -04:00
Dan ecff7d20d3 Adding a test for the new endpoint and cleaning up the API documenation 2021-04-21 14:00:19 -04:00
Kelly McDonald 19e94da6b6 Fix slight bug in expansion code, 
a non-expanded node was causing all parent levels to not expand.
 2021-04-20 11:11:11 -04:00
Kelly McDonald e2197ddab9 Changes to support the frontend data pane 
fixes #277 and requires frontend branch 277-document-pane
 2021-04-20 08:12:27 -04:00
Dan Funk 277beb345f
Merge pull request #290 from sartography/auto-set-primary-bpmn-142 
Auto set primary bpmn #142
 2021-04-16 13:36:02 -04:00
Dan Funk 8fa79f1285
Merge pull request #289 from sartography/document-deletion-on-restart-279 
Document deletion on restart #279
 2021-04-16 13:33:11 -04:00
mike cullerton fdaa069886 Added test for automatically setting the primary bpmn for a workflow spec 2021-04-15 13:29:42 -04:00
mike cullerton 8953637466 moved the minimal_bpmn method to base_test 2021-04-15 13:28:03 -04:00
mike cullerton 2374400542 Automatically set the first workflow for a workflow_spec to primary 2021-04-15 12:39:12 -04:00
mike cullerton 2d4a68da6d Added test for deleting files on restart. 2021-04-15 11:30:17 -04:00
mike cullerton 69396f9888 Modified base_test restart_workflow_api to accept and pass on the new delete_files argument when restarting a workflow 2021-04-15 11:28:35 -04:00
mike cullerton 91e80d01bc Added delete_files argument to the workflow_processor reset method. 
Added code to delete the files when delete_files is True.
 2021-04-15 11:25:58 -04:00
mike cullerton 3332b9c7c0 Added delete_files argument to the restart_workflow api method, and pass it along to WorkflowProcessor.reset 2021-04-15 11:23:20 -04:00
mike cullerton 4615649938 Added delete_files argument to the workflow restart api endpoint 2021-04-15 11:21:51 -04:00
Kelly McDonald 949f3be403 give an endpoint to return all files associated with a study 2021-04-12 12:23:33 -04:00
Dan 069de83bd5 forgot to include a bpmn for the tests. 2021-04-09 09:02:43 -04:00
Dan 6427a54d74 Set the correct default value on enumerations - if it is a multi-select enum (checkbox is set) then it should return a default value of an empty array, and not a dictionary. 2021-04-09 08:40:58 -04:00
Dan 99394ef953 Fix to spiffworkflow. 2021-04-08 16:11:49 -04:00
Dan 41310b6879 Allow both a keyword argument, a single argument when calling delete_file. And call it "delete_file" to be more conssitent with existing scripts. 2021-04-08 13:42:17 -04:00
Dan Funk 611c72f431
Merge pull request #284 from sartography/delete-uploaded-file-script-283 
Delete uploaded file script #283
 2021-04-08 12:42:30 -04:00
Dan Funk b0896548f2
Merge pull request #285 from sartography/dependabot/pip/deploy/urllib3-1.26.4 
Bump urllib3 from 1.26.3 to 1.26.4 in /deploy
 2021-04-08 12:35:30 -04:00
dependabot[bot] e3302c56ea
Bump urllib3 from 1.26.3 to 1.26.4 in /deploy 
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.3 to 1.26.4.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/1.26.3...1.26.4)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-04-06 18:08:27 +00:00
mike cullerton 5155db89f9 Added test for deleting multiple files. 
Fixed existing tests to accommodate changes to test workflow bpmn file
 2021-04-05 15:13:32 -04:00
mike cullerton 70fbd49aab Modified my test workflow so it works better for testing multiple file deletions 2021-04-05 15:12:14 -04:00
mike cullerton f8428378e2 You can now delete a document or list of documents. 
Also, refactored the fancy bits into `process_document_deletion`
 2021-04-05 15:11:06 -04:00
mike cullerton 33cef2bd2a Added tests for failing conditions 2021-04-05 13:19:29 -04:00
mike cullerton c6b1fd4e52 Fix for failing tests. Q_COMPLETE is no longer a column in the PB Mock study table. 2021-04-05 13:18:56 -04:00
mike cullerton 61f37ff894 Changed the order of imports so I could debug a failing test 2021-04-05 13:16:43 -04:00
mike cullerton f0f5cff8d7 Added some checks to do_task to look for valid irb_doc_code and whether or not we found a file 
Added code for do_task_validate
 2021-04-05 13:15:09 -04:00
Dan 4fd8fd13f8 Remove approvals from the study_info script. It was broken, and isn't really possible in this way anymore 2021-04-05 12:52:23 -04:00
Dan 501487b31c Assure we convert to box for validations as well, and test the bloodly snot out of this. 2021-04-05 12:47:50 -04:00
Dan 727aa72e18 Fix a bug from recent performance improvments - be sure that our study info script returns dicts that can be referenced immediately with dot notation, as this is a common pattern in our bpmn script tasks. 2021-04-05 11:31:06 -04:00
mike cullerton 9317e49e65 Merge branch 'dev' into delete-uploaded-file-script-283 2021-04-05 10:40:33 -04:00
Kelly McDonald 9f66a938f2 Update pip 2021-04-05 10:19:29 -04:00
mike cullerton d81497f8cb Test and workflow for new script to delete IRB documents 2021-04-05 08:55:41 -04:00
mike cullerton 0eb6291740 Script to delete an IRB document. Takes an `irb_document` argument. 
Deletes all files associated with the workflow with that IRB document code
 2021-04-05 08:55:02 -04:00
Dan Funk 7ef43fd477
Merge pull request #279 from sartography/263-optimize-dashboard 
263 optimize dashboard
 2021-04-02 18:54:56 -04:00
Dan 9dca220089 updating package.lock 2021-04-02 17:58:43 -04:00
Dan dcb4e7b736 fixing an error by taking a bit of the magic out of one of Mike's regex hinting tools. I figure the hint is still good, and a little less bittle, and all the information is already there if people need to dig. 2021-04-02 17:58:27 -04:00