586a0f2f1a
Merge pull request #325 from sartography/feature/file_refactor
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Prefer tasks that share a parent over just the the next available tas…
2021-06-08 11:28:23 -04:00
8d79fe9d94
Fixing failing tests, and now asserting that we only perform the post_process_form if we actually have a form.
2021-06-08 11:16:10 -04:00
9c4994581d
Merge pull request #324 from sartography/modify-infinite-loop-312
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Modify infinite loop #312
2021-06-08 10:30:13 -04:00
e10b210302
Merge pull request #323 from sartography/shield-test-issue-344
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Shield test issue #344
2021-06-08 08:59:58 -04:00
a7b208f50a
Merge pull request #322 from sartography/data-store-refactor-330
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Data store refactor #330
2021-06-08 08:58:53 -04:00
6937c33719
Merge pull request #319 from sartography/datastore-file-endpoints-325
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Datastore file endpoints #325
2021-06-08 08:54:43 -04:00
37d4e7cc79
Merge pull request #318 from sartography/340-update_study_associate_change
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Add test and fix to make sure that an empty study associates list (or…
2021-06-08 08:52:44 -04:00
59f605c3df
Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor.
2021-06-08 08:03:14 -04:00
9dc5871848
Added mocked PB data for tests using study_info script.
2021-06-07 10:08:44 -04:00
70651e2a6a
Test and BPMN files for testing
2021-06-04 11:45:51 -04:00
37ba46fb8f
These tests now require PB Mock because of the validate_study_id changes
2021-06-03 14:30:00 -04:00
a2e577829a
Cleanup:
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- removed unused imports
- removed testing print statement
2021-06-02 10:02:26 -04:00
200a5b3bf3
Updated tests for file datastore endpoint
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Added test of 2 entries
2021-06-01 16:27:55 -04:00
ec8353aaa6
Test for new datastore file api endpoint
2021-06-01 13:51:40 -04:00
8c04e228e9
Add test and fix to make sure that an empty study associates list (or a blank list) will effectively clear the extra study associates
2021-06-01 11:46:43 -04:00
a5d67bb245
337 partial fix
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if the user calls the file_data_set function for a valid file with the key 'irb_code' and a value of a valid IRB document code, then we should set the irb code on the file.
2021-05-27 12:24:30 -04:00
ef7ee284b2
Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor.
2021-05-19 16:26:16 -04:00
77f7fec5d4
Merge pull request #312 from sartography/study-is-none-329
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Study is none #329
2021-05-14 16:33:04 -04:00
668e2f4e3c
Merge pull request #313 from sartography/feature/add_file_data_store_properties_to_file
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Assure that any data store values associated with a file come back as…
2021-05-14 16:30:35 -04:00
8e37f27399
Assure that any data store values associated with a file come back as a part of the get_study_data[documents
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] endooint.
2021-05-14 15:52:25 -04:00
e75d933830
Make sure a standalone study does not cause an error in the /task_events api endpoint.
2021-05-14 15:35:17 -04:00
4d7ce5eda9
Merge pull request #311 from sartography/deprecate-study-info-protocol-261
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Deprecate study info protocol #261
2021-05-14 14:14:18 -04:00
1a8c374ac0
Need to mock out these tests
2021-05-14 13:32:25 -04:00
a53e2db223
Final test for study_info script
2021-05-14 13:10:06 -04:00
ade7812540
Merge pull request #310 from sartography/get-primary-workflow-301
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Get primary workflow #301
2021-05-14 12:41:48 -04:00
6a34fc0cde
Merge pull request #309 from sartography/persist-read-only-data-324
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Persist read only data #324
2021-05-14 12:38:48 -04:00
1d28d602d5
Merge pull request #308 from sartography/get-dashboard-url-230
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Get dashboard url #230
2021-05-14 12:36:40 -04:00
b0fcb09581
Fixed test to correspond to the changes in the mock data
2021-05-14 12:35:36 -04:00
99da502912
Merge branch 'dev' into 321-Markdown-Macro
2021-05-14 12:32:41 -04:00
1509bf23f8
Added some detail to the study_details mock data
2021-05-14 12:26:54 -04:00
3e756dd501
Added two more test for the study_info script
2021-05-14 12:26:20 -04:00
885c4c9a20
Started writing tests for the study_info script.
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Need to add some mock data for a couple more
2021-05-13 16:30:17 -04:00
4c8ea14435
Fixed test - changed the method name
2021-05-12 14:07:54 -04:00
8f8d9d30e4
Added test for get_primary_workflow
2021-05-12 13:52:18 -04:00
67321ecd97
Test and workflow for persisting read-only data
2021-05-07 14:07:19 -04:00
4dc4e270aa
Fixed the test to also use HTTPS
2021-05-06 15:54:39 -04:00
375089e5df
test and bpmn file for new get_dashboard_url script
2021-05-06 15:32:28 -04:00
09a395fa34
Start for ticket 230 - Get Dashboard URL
2021-05-06 14:07:21 -04:00
cbd1d01203
Add URL to the study_info('documents') script
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fixes #321 - I merged in branches that fix #320 and #297
320-add-default-for-file-data-get
297-filename-in-documents
2021-05-05 11:30:08 -04:00
8f28970f92
Resolving an alembic conflict.
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Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens. This seems to be working locally.
2021-05-04 13:39:49 -04:00
8b0afa4437
Merge pull request #304 from sartography/irb-info-script-307
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Irb info script #307
2021-05-04 11:40:52 -04:00
34759a2f3d
Merge branch 'dev' into feature/performance-refactor
2021-05-04 11:30:13 -04:00
4780240103
Merge pull request #302 from sartography/320-add-default-for-file-data-get
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Add default capability to file_data_get script
2021-05-04 11:28:40 -04:00
d6054a9846
Merge branch 'dev' into 310-task-event-timezone
2021-05-04 11:21:36 -04:00
77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
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Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
576f3a661d
Removed print statement used while debugging.
2021-05-03 14:52:01 -04:00
c8446bfafd
Mock the Protocol Builder response in my test
2021-05-03 14:51:27 -04:00
9465b6408d
Test and workflow for new `get_irb_info` script
2021-05-01 15:53:43 -04:00
1bcf4ea02e
Test and mock data for new `get_irb_info` service in ProtocolBuilderService
2021-05-01 15:23:07 -04:00
a719cf4bf9
When retrieving the study, only update the status of underlying workflows if specifically requested.
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Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
7608a889fb
Add default capability to file_data_get
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script
2021-04-30 10:11:50 -04:00
2b9cee6b89
Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC
2021-04-29 10:25:28 -04:00
09d8c8bcba
added missing test for update_workflow_spec_category
2021-04-26 12:57:08 -04:00
21e95b106d
Merge pull request #295 from sartography/299-document-datastore
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Add file_data_get and file_data_set functions that can be accessed in…
2021-04-26 12:49:46 -04:00
0aa3e8f586
added missing test for add_workflow_spec_category
2021-04-26 12:41:50 -04:00
047c68b2b5
Just some quick tidying up. Dropping commented out code, and using the SQLAlchemyAutoSchema to handle serializing db models
2021-04-26 12:31:22 -04:00
b73c2ff1cb
Added missing test for `get_workflow_from_workflow_spec`
2021-04-26 12:00:06 -04:00
1a44f50de6
Added `standalone` argument to fix failing test.
2021-04-26 11:21:35 -04:00
39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204
2021-04-26 10:27:32 -04:00
d3d7eeb309
Add file_data_get and file_data_set functions that can be accessed in a bpmn script function
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Fixes #299
2021-04-26 09:41:14 -04:00
7cca559747
Fixed issue where we were passing in a workflow_api instead of a workflow when completing a form in tests.
2021-04-26 08:58:09 -04:00
c002ef1e76
Added test for new api endpoint to get all standalone workflow_specs.
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Modified test_add_new_workflow_specification to include new standalone argument
2021-04-26 08:56:21 -04:00
54ab7bd2f6
Test and workflow for launching a standalone workflow
2021-04-26 08:53:25 -04:00
a17e1bfaca
When completing a form in a test, check whether workflow is standalone.
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Do not set study_id when workflow is standalone.
*** Note the comment about passing in workflow_spec. We should be passing in a workflow, not a workflow_spec.
2021-04-26 08:50:46 -04:00
6c98e8a2f4
removed duplicate code
2021-04-26 08:47:03 -04:00
dd7c5fd1c1
Fixes #306 assure that we take the doc_code into account if passed in as an argument to the API for get_files.
2021-04-23 16:16:19 -04:00
cf051a7d4f
Merge branch 'dev' into 277-Document-pane
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# Conflicts:
# crc/api/file.py
2021-04-21 14:09:44 -04:00
ecff7d20d3
Adding a test for the new endpoint and cleaning up the API documenation
2021-04-21 14:00:19 -04:00
e2197ddab9
Changes to support the frontend data pane
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fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
277beb345f
Merge pull request #290 from sartography/auto-set-primary-bpmn-142
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Auto set primary bpmn #142
2021-04-16 13:36:02 -04:00
fdaa069886
Added test for automatically setting the primary bpmn for a workflow spec
2021-04-15 13:29:42 -04:00
8953637466
moved the minimal_bpmn method to base_test
2021-04-15 13:28:03 -04:00
2d4a68da6d
Added test for deleting files on restart.
2021-04-15 11:30:17 -04:00
69396f9888
Modified base_test restart_workflow_api to accept and pass on the new delete_files argument when restarting a workflow
2021-04-15 11:28:35 -04:00
069de83bd5
forgot to include a bpmn for the tests.
2021-04-09 09:02:43 -04:00
6427a54d74
Set the correct default value on enumerations - if it is a multi-select enum (checkbox is set) then it should return a default value of an empty array, and not a dictionary.
2021-04-09 08:40:58 -04:00
41310b6879
Allow both a keyword argument, a single argument when calling delete_file. And call it "delete_file" to be more conssitent with existing scripts.
2021-04-08 13:42:17 -04:00
611c72f431
Merge pull request #284 from sartography/delete-uploaded-file-script-283
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Delete uploaded file script #283
2021-04-08 12:42:30 -04:00
5155db89f9
Added test for deleting multiple files.
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Fixed existing tests to accommodate changes to test workflow bpmn file
2021-04-05 15:13:32 -04:00
70fbd49aab
Modified my test workflow so it works better for testing multiple file deletions
2021-04-05 15:12:14 -04:00
33cef2bd2a
Added tests for failing conditions
2021-04-05 13:19:29 -04:00
c6b1fd4e52
Fix for failing tests. Q_COMPLETE is no longer a column in the PB Mock study table.
2021-04-05 13:18:56 -04:00
61f37ff894
Changed the order of imports so I could debug a failing test
2021-04-05 13:16:43 -04:00
501487b31c
Assure we convert to box for validations as well, and test the bloodly snot out of this.
2021-04-05 12:47:50 -04:00
727aa72e18
Fix a bug from recent performance improvments - be sure that our study info script returns dicts that can be referenced immediately with dot notation, as this is a common pattern in our bpmn script tasks.
2021-04-05 11:31:06 -04:00
9317e49e65
Merge branch 'dev' into delete-uploaded-file-script-283
2021-04-05 10:40:33 -04:00
d81497f8cb
Test and workflow for new script to delete IRB documents
2021-04-05 08:55:41 -04:00
dcb4e7b736
fixing an error by taking a bit of the magic out of one of Mike's regex hinting tools. I figure the hint is still good, and a little less bittle, and all the information is already there if people need to dig.
2021-04-02 17:58:27 -04:00
3ad3a086ba
Merge branch 'dev' into 263-optimize-dashboard
2021-04-02 17:12:02 -04:00
2100f27976
fixing the api.yml file which was starting to throw errors when updating the libraries.
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Seems that sqlalchemy now has a hard time incrementing sequences, so putting in a fix for this.
Upgrading many of our libraries, to avoid any disconnects as we try to handle security patches from these automated bumps.
2021-04-02 17:10:05 -04:00
116bf5e7aa
Merge branch 'dev' into 263-optimize-dashboard
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# Conflicts:
# crc/services/study_service.py
2021-03-31 10:20:33 -04:00
60f5be1aef
Check in - pending change from @cullerton
2021-03-30 12:10:49 -04:00
b5d4df595f
Merge pull request #271 from sartography/master-workflow-status-messages-222
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Master workflow status messages 222
2021-03-26 20:52:24 -04:00
123ec50912
Merge pull request #272 from sartography/infinite-validations-262
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Infinite validations 262
2021-03-26 19:49:42 -04:00
ac4877fecf
Merge remote-tracking branch 'origin/dev' into master-workflow-status-messages-222
2021-03-26 17:47:57 -04:00
3ee8109535
Tests for the changes to master workflow status dictionary
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Test for each valid WorkflowState
Test for all three failure states; not in status, not a dictionary, not a valid state.
2021-03-22 17:52:14 -04:00
47ff29e3ab
Added a test for dictionary output from a decision table.
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Will need dictionary output for master workflow status messages.
2021-03-18 12:25:27 -04:00
c4b52f85af
Test and workflow for testing infinite loop code.
2021-03-17 14:52:50 -04:00
70efdb4788
The `do_task_validate_only` method in the `get_study_associates` script now returns a mocked list of associates.
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It used to return `True`, and this caused shield validation to fail when looping over the results of `get_study_associates`.
(You can't loop over a boolean)
Added a for loop in `study_sponsors_associate.bpmn` to test for this.
Moved `BaseTest` import to the top of `test_study_associate_script` because debug was failing.
2021-03-16 08:57:30 -04:00
14386b8ba9
Merge pull request #264 from sartography/bug/243_complete_all
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Bug/243 complete all
2021-03-14 12:34:55 -04:00
Dan Funk
mike cullerton
Kelly McDonald
Mike Cullerton