NWalker4483
2364c240b2
Error Text Changed
2021-06-09 14:54:43 -04:00
NWalker4483
338fe30984
Merge branch 'dev' of https://github.com/sartography/cr-connect-workflow into partial_testing
2021-06-09 14:32:01 -04:00
NWalker4483
17077be701
exit at task
2021-06-09 12:40:38 -04:00
Kelly McDonald
5f722d675f
Add a function that gets runs via a background scheduler to look for any workflows that are in a 'waiting' state - it runs the update waiting tasks and does do_engine_steps
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We have a test for the function that runs, but an assumption was made that the scheduler module has its own unit tests and we do not need to test that.
fixes #346
2021-06-09 10:42:34 -04:00
Dan
fce9166c4a
Do not require users to be admins for viewing the document directory tab.
2021-06-09 09:51:30 -04:00
Kelly McDonald
0d8d251e8e
Temp save to test dev
2021-06-09 09:24:37 -04:00
Dan
286803d10b
fixing a big stupid bug I created when merging all the code and making changes to the files.
2021-06-08 14:24:59 -04:00
Dan Funk
586a0f2f1a
Merge pull request #325 from sartography/feature/file_refactor
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Prefer tasks that share a parent over just the the next available tas…
2021-06-08 11:28:23 -04:00
Dan
8d79fe9d94
Fixing failing tests, and now asserting that we only perform the post_process_form if we actually have a form.
2021-06-08 11:16:10 -04:00
Dan Funk
9c4994581d
Merge pull request #324 from sartography/modify-infinite-loop-312
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Modify infinite loop #312
2021-06-08 10:30:13 -04:00
Dan Funk
e10b210302
Merge pull request #323 from sartography/shield-test-issue-344
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Shield test issue #344
2021-06-08 08:59:58 -04:00
Dan Funk
a7b208f50a
Merge pull request #322 from sartography/data-store-refactor-330
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Data store refactor #330
2021-06-08 08:58:53 -04:00
Dan Funk
6937c33719
Merge pull request #319 from sartography/datastore-file-endpoints-325
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Datastore file endpoints #325
2021-06-08 08:54:43 -04:00
Dan Funk
37d4e7cc79
Merge pull request #318 from sartography/340-update_study_associate_change
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Add test and fix to make sure that an empty study associates list (or…
2021-06-08 08:52:44 -04:00
Dan Funk
c4a6fbb516
Merge pull request #317 from sartography/337-Data-Store-IRB-Code
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337 partial fix
2021-06-08 08:51:09 -04:00
Dan Funk
5881c903ca
Merge pull request #316 from sartography/326-Multi_File_Data_Store
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Make sure we are using the correct script engine
2021-06-08 08:49:43 -04:00
Dan Funk
710921cfe1
Merge pull request #314 from sartography/deprecate-study-info-protocol-261
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Remove protocol from study_info script #261
2021-06-08 08:47:43 -04:00
Dan
59f605c3df
Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor.
2021-06-08 08:03:14 -04:00
mike cullerton
a3a485dd34
Changed do_task_validate_only so it returns a mocked value, instead of True/False.
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True/False caused problems for workflow validations
2021-06-04 11:44:55 -04:00
mike cullerton
9a63ab9c4f
Change do_task_validate_only in study_info script to call the real do_task.
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We do this so we can seed settings into the workflow for testing different scenarios using the study from validate_study_id
2021-06-03 14:28:24 -04:00
mike cullerton
c41657301a
Modify test_spec and make_test_workflow to accept new optional validate_study_id parameter.
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Modify `make_test_workflow` to use study_id when creating test workflow for validation.
2021-06-03 14:22:26 -04:00
mike cullerton
0dfc96d7f6
Modified validate_workflow_specification to accept new optional validate_study_id parameter.
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We then pass validate_study_id on to WorkflowService.test_spec
2021-06-03 14:19:41 -04:00
mike cullerton
d657744816
Added optional validate_study_id parameter to the validation api endpoint.
2021-06-03 14:17:12 -04:00
mike cullerton
7f0d8a131d
Import DataStoreBase from service now
2021-06-02 10:00:55 -04:00
mike cullerton
506b84a49a
Import DataStoreBase from service now
2021-06-02 10:00:18 -04:00
mike cullerton
e2e35b673d
Moved data store code from script to service
2021-06-02 09:59:41 -04:00
mike cullerton
162dee45d3
Unused import
2021-06-01 16:34:21 -04:00
mike cullerton
2e3d8c7343
Fix for DataStoreSchema missing the file_id column.
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The file_id column is a foreign key.
2021-06-01 13:51:10 -04:00
mike cullerton
1ed144536f
New method for file datastore api endpoint
2021-06-01 13:50:04 -04:00
mike cullerton
e9fe555e05
New /datastore/file/{file_id} endpoint definition
2021-06-01 13:49:21 -04:00
Kelly McDonald
8c04e228e9
Add test and fix to make sure that an empty study associates list (or a blank list) will effectively clear the extra study associates
2021-06-01 11:46:43 -04:00
Kelly McDonald
a5d67bb245
337 partial fix
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if the user calls the file_data_set function for a valid file with the key 'irb_code' and a value of a valid IRB document code, then we should set the irb code on the file.
2021-05-27 12:24:30 -04:00
Kelly McDonald
acccf3b704
Make sure we are using the correct script engine
2021-05-26 10:50:20 -04:00
mike cullerton
384da075ef
Removed references to protocol from the description
2021-05-20 11:54:12 -04:00
Dan
ef7ee284b2
Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor.
2021-05-19 16:26:16 -04:00
Dan Funk
77f7fec5d4
Merge pull request #312 from sartography/study-is-none-329
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Study is none #329
2021-05-14 16:33:04 -04:00
Mike Cullerton
668e2f4e3c
Merge pull request #313 from sartography/feature/add_file_data_store_properties_to_file
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Assure that any data store values associated with a file come back as…
2021-05-14 16:30:35 -04:00
mike cullerton
ce7c07679b
SonarCloud
2021-05-14 15:52:30 -04:00
Dan
8e37f27399
Assure that any data store values associated with a file come back as a part of the get_study_data[documents
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] endooint.
2021-05-14 15:52:25 -04:00
mike cullerton
a9e3f7c861
Standalone workflows do not have a study_id, and we do not record task events for them.
2021-05-14 15:34:29 -04:00
Dan Funk
4d7ce5eda9
Merge pull request #311 from sartography/deprecate-study-info-protocol-261
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Deprecate study info protocol #261
2021-05-14 14:14:18 -04:00
Dan
7e6645db89
Merge branch 'dev' of github.com:sartography/cr-connect-workflow into dev
2021-05-14 14:10:19 -04:00
Dan
427875b8dd
upgrading Sartography libraries, and fixing a potential error where a file can't be located in the documents.xslt
2021-05-14 14:10:14 -04:00
Dan Funk
ade7812540
Merge pull request #310 from sartography/get-primary-workflow-301
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Get primary workflow #301
2021-05-14 12:41:48 -04:00
Dan Funk
6a34fc0cde
Merge pull request #309 from sartography/persist-read-only-data-324
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Persist read only data #324
2021-05-14 12:38:48 -04:00
Dan Funk
1d28d602d5
Merge pull request #308 from sartography/get-dashboard-url-230
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Get dashboard url #230
2021-05-14 12:36:40 -04:00
Dan Funk
415964806d
Merge pull request #307 from sartography/standalone-set-default-false-323
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Set the default for the `standalone` parameter to `false`. #323
2021-05-14 12:33:33 -04:00
Dan Funk
99da502912
Merge branch 'dev' into 321-Markdown-Macro
2021-05-14 12:32:41 -04:00
Dan
a1bb30e689
Switching from using "default" to "server_default" for all default time settings, and running migrations so that this is set at the database level rather than in python, to hopefully correct some issues with dates being 4 hours in the future. Having a very hard time replicating this issue locally.
2021-05-14 12:28:50 -04:00
mike cullerton
9b24ad319b
Removed the get_protocol method from study_service.
2021-05-13 16:29:34 -04:00
