Dan Funk
7b21b78987
Workflow Processor will deserialize workflows using the version of the BPMN files used during creation, but allows for both a soft and hard reset - soft resets will use the new workflow without a restart and will retain full history. A hard-reset will restart the workflow from scratch, but will retain the data from the last completed task. Workflows have a complex version number associated with them that is used during the deserialization to find the correct files.
2020-03-05 15:38:30 -05:00
Dan Funk
697d930eab
Modify the workflow processor to accept a workflow model - so it can take on more of the responsibilities of updating this model and managing versions.
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Changing the version information so that it includes the numbers of the files used to generate the serialized workflow.
2020-03-05 13:25:28 -05:00
Dan Funk
70611e2c1d
Adding the version of the specification used to create a workflow to the workflow api endpoint. Though the exact content of this version is likely to change.
...
Split the API specific models out from the workflow models to help me keep this straight.
Added tests to help me understand the errors thrown the and resolution path when a workflow specification changes in the midst of a running workflow.
2020-03-05 11:18:20 -05:00
Dan Funk
c5cee4761e
Improve version handling of files. Consolidate more of this logic in FileService. Place the version on the actual data model, not the file model, so the file model remains the same, and we just version the data associated with it.
2020-03-04 13:40:25 -05:00
Aaron Louie
f7416065da
Merge remote-tracking branch 'origin/master'
2020-03-02 13:16:43 -05:00
Aaron Louie
b0c4996fb3
Populates documentation.
2020-03-02 13:14:03 -05:00
Dan Funk
5e3fdaaa94
New set of "Tools" api endpoints, that provides a way to quickly render markdown or word documents by uploading json data and a template to populate.
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Improved Error messages / Error processing. You can now just throw an APIError anywhere, and it will be properly serialized and returned.
2020-02-29 17:22:38 -05:00
Aaron Louie
dc53939eb1
Merge remote-tracking branch 'origin/master' into feature/protocol-builder
2020-02-28 11:17:17 -05:00
Aaron Louie
4534b0c2df
Updates study model to better match Protocol Builder. Deletes all migrations and starts over, since Alembic has problems migrating changes to existing column constraints.
2020-02-28 11:14:30 -05:00
Aaron Louie
0cc59d0974
Adds study inactive flag. Sets study to inactive if not found in Protocol Builder.
2020-02-27 11:17:58 -05:00
Aaron Louie
27d7afb656
Adds Protocol Builder models and schemas. Reorganizes and cleans up some files.
2020-02-27 09:54:46 -05:00
Aaron Louie
3ef4860391
Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database
2020-02-26 18:06:51 -05:00
Dan Funk
c6eb2d937d
Enable autoescape security feature for processing markdown data in descriptions from the BPMN Diagrams
2020-02-25 16:21:47 -05:00
Dan Funk
1e8a095760
Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.
2020-02-25 12:01:25 -05:00
Aaron Louie
0cda7c66e5
Merge remote-tracking branch 'origin/master'
2020-02-20 15:43:34 -05:00
Aaron Louie
581434b453
Adds SSO header attributes
2020-02-20 15:43:29 -05:00
Dan Funk
a94596112d
Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.
2020-02-20 14:35:21 -05:00
Dan Funk
1a9b5b50e5
Merge branch 'master' of github.com:sartography/cr-connect-workflow
2020-02-18 16:39:11 -05:00
Dan Funk
a642593e3d
Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly.
2020-02-18 16:38:56 -05:00
Aaron Louie
16db1e3504
Adds default_value to Task schema
2020-02-18 10:14:03 -05:00
Dan Funk
1d24ebe382
Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level.
2020-02-10 16:19:23 -05:00
Aaron Louie
f142d02a30
Adds workflow_spec_id back in to WorkflowApi
2020-02-07 12:36:08 -05:00
Dan Funk
eae6c8dd1a
update to last commit, left an extra column on workflow model that does not need to exist.
2020-02-07 11:57:48 -05:00
Dan Funk
9bd93748be
Returning better cleaner information about workflow with the workflow endpoint. Removes the get_all_tasks and get_user_tasks endpoints as tasks are returned with the workflow. Workflow endpoint also includes the last task and next_task, which may or may not be user tasks. The task "type" returned is now the class name of the task_spec, rather than just the word "task".
2020-02-07 11:34:44 -05:00
Aaron Louie
71dac70e1f
Updates list of allowed files. Removes unnecessary migrations. Note this will require a full wipe & reset of the database to work.
2020-02-05 17:23:37 -05:00
Aaron Louie
654f39e7fd
Adds form field key to file model.
2020-02-05 14:55:31 -05:00
Aaron Louie
3ee0426ba9
Adds workflow_id to file endpoints.
2020-02-04 14:26:53 -05:00
Aaron Louie
098ecb3e87
Wipes out old migrations, since changing foreign key constraints in SQLite requires a full database reset anyways.
2020-02-04 09:57:02 -05:00
Aaron Louie
0368657549
Adds ability to get FileModel records by study and task
2020-02-03 21:56:18 -05:00
Dan Funk
8fbbed4feb
You must all "do engine steps" when completing a task so that it will kick off any automatic tasks/decisions/etc... this will update remaining tasks. Added some tests for parallel, since I wrote them trying to debug this.
2020-02-03 15:15:36 -05:00
Aaron Louie
8cc04aaad2
Adds task data to Task schema
2020-02-03 10:49:48 -05:00
Aaron Louie
e4b2a7a641
Adds endpoint to retrieve all user tasks for a workflow, regardless of state
2020-01-31 12:40:08 -05:00
Aaron Louie
7fc2e87b84
Adds primary process ID to workflow spec
2020-01-23 10:54:41 -05:00
Aaron Louie
803e4be008
Stores workflow JSON
2020-01-23 10:53:59 -05:00
Aaron Louie
c11bf3d286
Adds workflow spec name field
2020-01-21 15:22:44 -05:00
Aaron Louie
53d72bdaae
Includes workflow spec id
2020-01-13 17:52:37 -05:00
Aaron Louie
872f3fca1b
Returns workflow spec id with Workflow schema
2020-01-06 09:18:13 -05:00
Aaron Louie
e75da611ca
Adds endpoints for creating and updating a Study.
2020-01-03 11:44:24 -05:00
Dan Funk
c4cbaeb64e
Refactor models into seperate directories
2019-12-31 16:32:47 -05:00
