cf051a7d4f
Merge branch 'dev' into 277-Document-pane
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# Conflicts:
# crc/api/file.py
2021-04-21 14:09:44 -04:00
ecff7d20d3
Adding a test for the new endpoint and cleaning up the API documenation
2021-04-21 14:00:19 -04:00
e2197ddab9
Changes to support the frontend data pane
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fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
4615649938
Added delete_files argument to the workflow restart api endpoint
2021-04-15 11:21:51 -04:00
949f3be403
give an endpoint to return all files associated with a study
2021-04-12 12:23:33 -04:00
2100f27976
fixing the api.yml file which was starting to throw errors when updating the libraries.
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Seems that sqlalchemy now has a hard time incrementing sequences, so putting in a fix for this.
Upgrading many of our libraries, to avoid any disconnects as we try to handle security patches from these automated bumps.
2021-04-02 17:10:05 -04:00
ded11ddd82
fixing a code smell
2021-03-26 20:25:34 -04:00
14386b8ba9
Merge pull request #264 from sartography/bug/243_complete_all
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Bug/243 complete all
2021-03-14 12:34:55 -04:00
15c64c862e
Adding an argument to update task that will allow it to complete all remaining tasks through an "update_all" flag,
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this will allow us to remove some fairly complex logic from the front end that isn't behaving properly.
2021-03-12 20:41:07 -05:00
14e62a7ec2
Modify the send_email api endpoint (in Configurator Tools section) to accept subject, message, and data.
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Subject, address and message are required.
Data is not required.
Message is in the body of the request.
Subject, address, and data are in the query string.
2021-03-11 11:10:10 -05:00
aac3d5c16e
Bug #255 , this requires the front end to pass in the name of the task, when doing a lookup. This will prevent a bug where we have multiple user tasks, with enum fields that set the same variable, but use different lookup tables to populate the dropbown or search feature.
2021-03-01 14:54:04 -05:00
003bf2f9b9
Remove Approvals per ticket 183
2021-02-16 09:05:29 -05:00
e1532a90c9
New api endpoint for restarting a workflow. Unsure if I needed the responses section. **Dan, can you check this?**
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Also, removed clear_data and reload_spec as parameters for standard get workflow endpoint.
2021-01-19 15:00:39 -05:00
6a9e6d3570
Restart workflow without form data. Committing so Dan can check it out
2021-01-14 15:32:14 -05:00
adc4dc4453
redid the api a bit so that nothing was using open security - added a new endpoint for getting a workflow spec that uses the alternate API_TOKEN security and leave the original endpoint as it was.
2020-12-11 12:03:41 -05:00
3a1160efac
refactored calls into a service
2020-12-11 11:41:32 -05:00
993c7bc76e
fixed error on api.yml from search / replace
2020-12-11 08:29:37 -05:00
3f56dfe484
Move all workflow sync stuff into new file
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Make changes to api naming scheme
add some error checking around endpoints for missing/invalid endpoints
2020-12-10 10:46:23 -05:00
e377a05dea
Add some punctuation
2020-12-09 13:50:52 -05:00
c57b17df1e
Add a robust way of adding an API key, update examples and documentation for swagger API and add the ability to completely sync the local system from the remote system.
2020-12-09 12:13:17 -05:00
0e1aa59fa1
Make a change to make sure that if there is a new file locally that is not present remotely when we pull from the remote, the new local file gets deleted.
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Also: add several things to the requirements.txt that should have been there in the first place.
2020-12-08 13:42:01 -05:00
f26a8615a4
Get more file details so we can fill out everything locally and also add a method to download the file by md5_hash
2020-12-07 08:49:38 -05:00
d41d018fe3
For a given workflow - find the files that are different from a remote endpoint for the same workflow
2020-12-04 11:49:07 -05:00
0f59d3de09
add endpoint that gets a record for all changed /new workflow_specs at a remote endpoint
2020-12-03 14:45:57 -05:00
92aa1b971d
commit before removing big long SQL
2020-12-02 16:04:00 -05:00
66693d9f3a
Removing datastore script, as it isn't used in the api at all.
2020-11-18 15:06:28 -05:00
c62b73a539
drop some of the test-only api endpints and rework the tests so they aren't needed
2020-11-18 15:04:36 -05:00
70425eee0d
Add last_updated field - change the api signature to be closer to what we need going forward, but retain the old methods for testing the script get/set through the API
2020-11-13 12:03:29 -05:00
7c2c725840
save before changing how API works
2020-11-13 09:58:21 -05:00
9a4d167dcd
Add in api changes
2020-11-11 09:44:58 -05:00
66e49a347a
Minor tweaks to the eval endpoint, which should take both the expression and the data as one data structure.
2020-08-20 16:13:48 -04:00
04399eec2a
Accepting None for primary_investigator_id
2020-08-04 11:38:46 -06:00
cd9376cf8e
Adding back ability to update studies
2020-08-04 09:13:24 -06:00
50b207307a
Merge branch 'dev' into feature/update_study_status_latest
2020-07-31 14:26:24 -06:00
4fcba113b8
Fixing tests
2020-07-31 11:49:04 -06:00
5d23223e51
New study status update
2020-07-30 21:03:11 -06:00
d301e9e6fa
Adds list_users endpoint. Adds admin impersonate uid parameter to user endpoint. Adds some utility methods to user service. Refactors authentication tests.
2020-07-29 22:47:47 -04:00
0ea4c13d09
Convert protocol builder status to always be in lower case in order to better match the front end. And also fixing an issue with the multi_instance that is oddly broken suddenly, and I don't know why.
2020-07-28 17:16:48 -04:00
4d11fc04a0
dropping the "read_only" flag in favor of a "do_engine_steps" flag, which more clearly defines what is happening.
2020-07-28 13:51:29 -04:00
f15626033d
Allow the workflow to be requested without making changes to the workflow - requires that you specify a read_only flag of true, otherwise it assumes that you want a fully prepared workflow with the next ready task set to run.
2020-07-28 13:33:38 -04:00
300026cbc8
Expanding the task events endpoint to accept workflow and study ids as additional filters.
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Removing events from the study endpoint, too noisy.
2020-07-28 10:16:48 -04:00
a243c14d75
Updating to lastest spiffworkflow which uses box to support dot notation.
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Adding a new endpoint for evaluating the results of a python expression into the tools section of the api.
2020-07-22 11:30:16 -04:00
d01b30debc
Building the start of an endpoint that could be used by logged in / authenticated users that will evaluate basic python functions sent in via the API.
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The hope here is that we can process these in real time for the front end, but still do it using the same evaluation engine we use everywhere else, so
the syntax for things like hide-expressions can be properly verified during workflow validation and will be assured to work during front end rendering.
Removing any all javascript code in the BPMN models.
2020-07-21 13:57:33 -04:00
d85ca1ce51
Whenever a workflow is loaded or updated, add events to the TaskEvent table with assignments for the next set of ready tasks, along with who should complete those tasks.
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Add the lane information to the Task model.
Drop the foreign key constraint on the user_uid in the task log, as we might create tasks for users before they ever log into the system.
Add a new endpoint to the API called task events. It should be possible to query this and get a list of all tasks that need a users attention.
The task events returned include detailed information about the workflow and study as sub-models
Rename all the actions in event log to things that are easier to pass over the api as arguments, make this backwards compatible, updating existing names in the database via the migration.
Throughly test the navigation and task details as control of the workflow is passed between two lanes.
2020-07-14 22:16:44 -04:00
f183e12fe5
Provides some basic tools for getting additional information about a lookup field.
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Adds an optional 'value' parameter to the lookup endpoint so you can find a specific entry in the lookup table.
Makes sure the data attribute returned on a lookup model is a dictionary, and not a string.
Fixes a previous bug that would crop up if double spaces were used when performing a search.
2020-06-30 10:34:16 -04:00
d3ce1af1ce
Provides some basic tools for getting additional information about a lookup field.
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Adds an optional 'id' parameter to the lookup endpoint so you can find a specific entry in the lookup table.
Makes sure the data attribute returned on a lookup model is a dictionary, and not a string.
Fixes a previous bug that would crop up in double spaces were used when performing a search.
2020-06-30 10:00:22 -04:00
150117587e
Merge branch 'dev' into feature/parallel_multiinstance_tasks
2020-06-25 23:20:38 -04:00
bb825f8097
Dropping old parameter from endpoint
2020-06-22 14:09:58 -06:00
e5541e4950
Enable CSV download
2020-06-22 09:24:58 -06:00
1844c93919
STG-26 - basic test case for a looping task
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Criteria :
task.multi_instance_type == 'looping'
to terminate, use the standard endpoint for submitting form data with a query variable of terminate_loop=true
Will likely need two buttons:
"Submit and quit"
"Submit and add another"
or something similar
2020-06-17 11:35:06 -04:00
Dan
Kelly McDonald
mike cullerton
Carlos Lopez
Aaron Louie