Commit Graph

2104 Commits

Author SHA1 Message Date
mike cullerton 3e756dd501 Added two more test for the study_info script 2021-05-14 12:26:20 -04:00
mike cullerton 885c4c9a20 Started writing tests for the study_info script.
Need to add some mock data for a couple more
2021-05-13 16:30:17 -04:00
mike cullerton 9b24ad319b Removed the `get_protocol` method from study_service. 2021-05-13 16:29:34 -04:00
mike cullerton d189b84ba1 Removed `protocol` as an option in the study_info script 2021-05-13 16:22:42 -04:00
mike cullerton 4c8ea14435 Fixed test - changed the method name 2021-05-12 14:07:54 -04:00
mike cullerton 8f8d9d30e4 Added test for get_primary_workflow 2021-05-12 13:52:18 -04:00
mike cullerton 8a6bef5af4 New service to get the `primary workflow` for a workflow_spec, using a workflow_spec_id.
This is necessary because `primary` is a file parameter, not a workflow_spec parameter.

- you can ask a workflow file whether it is primary, but
- you cannot ask a workflow_spec for its primary workflow file

Now, you can use `workflow_service.get_primary_workflow(workflow_spec_id)`
2021-05-12 13:51:51 -04:00
mike cullerton 67321ecd97 Test and workflow for persisting read-only data 2021-05-07 14:07:19 -04:00
mike cullerton 07f3d2c2ee Allow data from read-only fields to persist in task_data 2021-05-07 14:06:53 -04:00
mike cullerton 4dc4e270aa Fixed the test to also use HTTPS 2021-05-06 15:54:39 -04:00
mike cullerton 5efb1a72ce Changed URL to use HTTPS instead of HTTP 2021-05-06 15:52:27 -04:00
mike cullerton 375089e5df test and bpmn file for new get_dashboard_url script 2021-05-06 15:32:28 -04:00
mike cullerton 8d698cf275 Added explicit config values for `FRONTEND` and `BPMN` hostname and port.
Use these new values to define `CORS_ALLOW_ORIGINS`

Removed unused `FRONTEND_AUTH_CALLBACK`
2021-05-06 15:31:33 -04:00
mike cullerton 09a395fa34 Start for ticket 230 - Get Dashboard URL 2021-05-06 14:07:21 -04:00
mike cullerton 6b242c07e2 Set the default for the `standalone` parameter to `false`. 2021-05-06 11:54:04 -04:00
Dan 620b9a5188 Fixing a regression. It's critical that Spiffworkflow's box implement deepcopy, as this is used by Jinga prior to generating a word document. 2021-05-05 21:36:57 -04:00
Dan 5a79b80f32 fixes #322, do not error out deleting files that have assocaited data stores, just remove the data store. 2021-05-05 20:21:33 -04:00
Dan 7831bef050 Don't fail the sync completely when a remote file does not exist. 2021-05-05 15:59:00 -04:00
Kelly McDonald cbd1d01203 Add URL to the study_info('documents') script
fixes #321 - I merged in branches that fix #320 and #297

320-add-default-for-file-data-get
297-filename-in-documents
2021-05-05 11:30:08 -04:00
Kelly McDonald 7ed30ef25a Merge branch '320-add-default-for-file-data-get' into 321-Markdown-Macro 2021-05-05 11:13:01 -04:00
Dan 8f28970f92 Resolving an alembic conflict.
Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens.  This seems to be working locally.
2021-05-04 13:39:49 -04:00
Dan Funk 8b0afa4437
Merge pull request #304 from sartography/irb-info-script-307
Irb info script #307
2021-05-04 11:40:52 -04:00
Kelly McDonald 7b3287f67b Save a sample file while I try to figure out how the JS is going to work 2021-05-04 11:32:34 -04:00
Dan Funk 50cb078390
Merge pull request #303 from sartography/feature/performance-refactor
Performance Refactor
2021-05-04 11:31:10 -04:00
Dan Funk 34759a2f3d
Merge branch 'dev' into feature/performance-refactor 2021-05-04 11:30:13 -04:00
Dan Funk 4780240103
Merge pull request #302 from sartography/320-add-default-for-file-data-get
Add default capability to file_data_get script
2021-05-04 11:28:40 -04:00
Dan Funk 0747e2141e
Merge pull request #301 from sartography/310-task-event-timezone
310 task event timezone
2021-05-04 11:21:49 -04:00
Dan Funk d6054a9846
Merge branch 'dev' into 310-task-event-timezone 2021-05-04 11:21:36 -04:00
Dan Funk 81467d6a8d
Merge pull request #299 from sartography/297-filename-in-documents
Add filename to files listing.
2021-05-04 11:19:59 -04:00
Dan Funk d68f319cf7
Merge pull request #298 from sartography/316-Shield-Test-Error
Emulate checks on keyword arguments and then return. Validate only sh…
2021-05-04 11:18:36 -04:00
Dan Funk 77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
mike cullerton 7689281d68 Fixed typo. Response should be list, not dict. 2021-05-03 14:52:29 -04:00
mike cullerton 576f3a661d Removed print statement used while debugging. 2021-05-03 14:52:01 -04:00
mike cullerton c8446bfafd Mock the Protocol Builder response in my test 2021-05-03 14:51:27 -04:00
mike cullerton 804926dbac Fixed problem where WorkflowService.make_test_workflow did not add a study to the workflow_model 2021-05-01 15:55:20 -04:00
mike cullerton 9465b6408d Test and workflow for new `get_irb_info` script 2021-05-01 15:53:43 -04:00
mike cullerton 060ee5076d New script to get IRB Info for a study 2021-05-01 15:52:41 -04:00
mike cullerton 1bcf4ea02e Test and mock data for new `get_irb_info` service in ProtocolBuilderService 2021-05-01 15:23:07 -04:00
mike cullerton 22b3230243 Added service `get_irb_info` to `crc.services.protocol_builder.ProtocolBuilderService`
Added environment variable `PB_IRB_INFO_URL` for new `get_irb_info` service
2021-05-01 15:20:47 -04:00
Dan a719cf4bf9 When retrieving the study, only update the status of underlying workflows if specifically requested.
Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
Kelly McDonald 7608a889fb Add default capability to file_data_get
script
2021-04-30 10:11:50 -04:00
mike cullerton eb153c3ffc Fixed column definition for standalone 2021-04-29 14:29:43 -04:00
mike cullerton 24c818bf31 Added study_id to workflow_api 2021-04-29 14:29:21 -04:00
Kelly McDonald 2b9cee6b89 Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC 2021-04-29 10:25:28 -04:00
Kelly McDonald cc77a9182c Add filename to files listing.
Fixes #297
2021-04-28 10:37:14 -04:00
Kelly McDonald dc6f1cc80d Emulate checks on keyword arguments and then return. Validate only should have no side effects so the previous behavior was a bug. 2021-04-28 10:03:52 -04:00
Kelly McDonald c029dad688 Convert some datetime columns to include timezone 2021-04-28 10:00:22 -04:00
Kelly McDonald 71a63c049d Merge remote-tracking branch 'origin/dev' into dev 2021-04-27 12:16:36 -04:00
Dan 248ca6a33a Don't require people to be admins just so they can see the list of documents, or we get recursive loads on Kelly's non admin account (and everyone elsees)
todo: Create a ticket to assure we don't get in an infinite loading loop.
2021-04-27 12:14:37 -04:00
Kelly McDonald 799747d638 Add filter for non-active studies so that the events for them do not get returned to the front end for the 'InProgress' data pane. 2021-04-27 12:13:49 -04:00