Commit Graph

2110 Commits

Author SHA1 Message Date
Dan 1f0b881b92 Hot patch, merging two heads. 2021-07-12 11:14:31 -04:00
Mike Cullerton 522ca9d164
Merge pull request #340 from sartography/bug/better_errors_on_scheduled_tasks
Assure we log reasonably clear errors when executing scheduled tasks …
2021-07-12 10:13:02 -04:00
Mike Cullerton d1bf370a39
Merge pull request #339 from sartography/restrict-loaded-studies-374
Restrict loaded studies #374
2021-07-12 10:11:34 -04:00
Mike Cullerton 7070761089
Merge pull request #338 from sartography/document-spreadsheet-name-380
Document spreadsheet name #380
2021-07-12 10:11:16 -04:00
Dan f982745d32 fixing a failing test, don't assume the study and workflow ids will always be 1. 2021-07-12 10:00:39 -04:00
Dan 1916c4ff54 Assure we log reasonably clear errors when executing scheduled tasks in the background, so that sentry can pick them up and they can be addressed effectively. 2021-07-12 09:43:12 -04:00
mike cullerton 69974e89fd Added 2 simple tests for filtering by REVIEW_TYPE 2021-07-09 11:39:30 -04:00
mike cullerton 682b010f6f Added mocked study_details with an invalid REVIEW_TYPE
This is used to test StudyService.get_studies_for_user
StudyService.get_studies_for_user should now filter on REVIEW_TYPE
2021-07-09 11:38:45 -04:00
mike cullerton 445d3e5f0b Added mocked pb study_details since we now check whether a study has valid REVIEW_TYPEs 2021-07-09 10:41:46 -04:00
mike cullerton 95c710768e Fixed test to reflect adding REVIEW_TYPE to mocked study_details PB data 2021-07-09 10:40:18 -04:00
mike cullerton 841bbe73ef Added REVIEW_TYPE to the mocked PB data 2021-07-09 10:38:41 -04:00
mike cullerton 690c059335 get_studies_for_user is no longer a static method 2021-07-09 10:37:57 -04:00
mike cullerton dad2de9f0c get_user_studies now checks study_details['REVIEW_TYPE'] before displaying a study.
This corresponds to REVIEWTYPENAME being `Full Committee`, `Expedited`, `Non-UVA IRB Full Board`, or `Non-UVA IRB Expedited`
2021-07-09 10:37:25 -04:00
Kelly McDonald 79c69037dd Filter out Library categories from the list returned 2021-07-08 08:57:40 -04:00
mike cullerton 05ba28b67b Merge branch 'dev' of https://github.com/sartography/cr-connect-workflow into dev 2021-07-07 14:33:17 -04:00
mike cullerton 1c9db16bff Migration to change filename from `irb_documents` to `documents` in the database 2021-07-07 13:27:57 -04:00
mike cullerton f1a15ef8e9 Fix the test 2021-07-07 12:54:16 -04:00
mike cullerton d6f9b013f7 Change `irb_documents` to `documents` 2021-07-07 12:54:03 -04:00
mike cullerton 23180908c8 Undo change. Wrong branch 2021-07-07 12:43:51 -04:00
mike cullerton c39e08972d Change irb_documents to documents 2021-07-07 12:42:01 -04:00
Dan Funk 8374ae3fde
Merge pull request #332 from sartography/add-name-error-hint-8
Add name error hint #8
2021-07-07 11:35:45 -04:00
Dan Funk 3c52453c26
Merge branch 'dev' into add-name-error-hint-8 2021-07-07 11:35:24 -04:00
Dan bef35e4bec Upgrading Spiffworkflow, just incorporating some additional tests. 2021-07-07 11:34:33 -04:00
Dan Funk 2ed436327f
Merge pull request #333 from sartography/check-study-script-273
Check study script #273
2021-07-07 11:28:32 -04:00
Dan Funk db9b228735
Merge pull request #334 from sartography/WaitingEventsHotPatch
Make a change so that anything that has a waiting event is labeled in…
2021-07-07 11:27:10 -04:00
Dan Funk 8cb7cbc0ad
Merge pull request #337 from sartography/add-by-user-61
Add by user #61
2021-07-07 11:25:45 -04:00
Dan 2a45f2fcda Merge branch 'dev' into add-name-error-hint-8 2021-07-07 11:24:00 -04:00
mike cullerton b0cf74fa3d Merge branch 'dev' into add-by-user-61
# Conflicts:
#	tests/files/test_files_api.py
2021-07-07 10:46:50 -04:00
mike cullerton ac19c3e3c6 Add users first 2021-07-07 10:33:30 -04:00
Dan Funk 5c229477d3
Merge pull request #336 from sartography/feature/better_errors
Feature/better errors
2021-07-07 10:30:41 -04:00
mike cullerton 621c11fe24 Add test for user_uid 2021-07-07 09:39:01 -04:00
mike cullerton c11b5cfb29 Add user_uid to api output 2021-07-07 08:18:02 -04:00
Dan fb54edac1c Adding additional details to error messages, and cleaning up the cruft around these messages to keep them clear and succinct.
Most noteable is the addition of the line on which the error occurs for script tasks.  It will report the line number and pass back the content of
the line that failed.
The validator only returns the first error it encounters, as it's clear that all we ever get right now is two of the same error.
Did a lot of work between this and spiffworkflow to remove all the places where we obfuscate or drop details as we converted between workflowExceptions and APIExceptions.
Dropped the python levenshtein dependency, in favor of just rolling a simple one ourselves in Spiffworkflow.
2021-07-07 00:53:49 -04:00
mike cullerton 894377a607 Add user_uid to FileDataModel calls 2021-07-06 17:09:00 -04:00
mike cullerton 23be257db0 Add user_uid column to file_data table 2021-07-06 17:07:47 -04:00
Dan a9805ad40c Adding some documentation for clarity. 2021-07-06 14:40:20 -04:00
Dan cafdc4d100 Removing an unneeded modification to the database structure for lookup tables. 2021-07-06 14:02:07 -04:00
Dan 04842aa66b Undo change to 1 minute. 2021-07-06 13:13:07 -04:00
Dan 7aa4b0833c Merge remote-tracking branch 'origin/dev' into feature/documents_xls_refactor 2021-07-06 13:11:08 -04:00
Dan 1b1a994360 Refactoring Reference files to use the lookup table, rather than parsing the results directly out of the spreadsheet, or attempting to cache them.
Adding a DocumentService to clean up the FileService, and get Documents well seperated, as it seems likely be pulled out or seperated in the future, there is now a Documents api file as well, for the same reason.
Some other minor changes are just fixing white space to assure our code is linting correctly.
I removed _create_study_workflow_approvals from the base test, as we don't use approvals like this anymore.
2021-07-06 13:10:20 -04:00
Kelly McDonald 9803a04d6d Make a change so that anything that has a waiting event is labeled in the database as waiting, even if it is sitting around waiting on a user input task that is ready 2021-07-06 11:46:47 -04:00
Kelly McDonald dce1d86e93 commit changes before looking at something else 2021-07-06 10:34:57 -04:00
mike cullerton 8145ff9025 Tests for calling the script 2021-07-02 16:14:19 -04:00
mike cullerton f647390e1c Added description and validate_only 2021-07-02 15:51:24 -04:00
mike cullerton 2cb2874a49 Added test and json data for new check_study pb mock api endpoint 2021-07-02 15:26:39 -04:00
mike cullerton 9690c69b6c added check_study method to protocol_builder service for new endpoint 2021-07-02 15:25:33 -04:00
mike cullerton cd26654b3a Script to call new pb mock api endpoint `check_study` 2021-07-02 15:21:35 -04:00
Mike Cullerton 7406bf7da1
Merge pull request #330 from sartography/partial_testing
Partial testing
2021-07-02 10:27:41 -04:00
Nile Walker a27073fd7e
Delete settings.json 2021-07-02 09:53:53 -04:00
Nile Walker 6e07d9d1cb
Delete launch.json 2021-07-02 09:53:46 -04:00