19104303de
Refactor of the way we store and return details about users - All the details about a user, or individual associated with a study is returned within in an Ldap model. I've removed duplication between these models. This required some cleanup of the tests, and a migration that will drop the user details.
2021-09-22 13:16:25 -04:00
b0cf74fa3d
Merge branch 'dev' into add-by-user-61
...
# Conflicts:
# tests/files/test_files_api.py
2021-07-07 10:46:50 -04:00
ac19c3e3c6
Add users first
2021-07-07 10:33:30 -04:00
1b1a994360
Refactoring Reference files to use the lookup table, rather than parsing the results directly out of the spreadsheet, or attempting to cache them.
...
Adding a DocumentService to clean up the FileService, and get Documents well seperated, as it seems likely be pulled out or seperated in the future, there is now a Documents api file as well, for the same reason.
Some other minor changes are just fixing white space to assure our code is linting correctly.
I removed _create_study_workflow_approvals from the base test, as we don't use approvals like this anymore.
2021-07-06 13:10:20 -04:00
8f28970f92
Resolving an alembic conflict.
...
Upgrading libraries, and resolving issues from that upgrade, including changes to how we manage tokens. This seems to be working locally.
2021-05-04 13:39:49 -04:00
d6054a9846
Merge branch 'dev' into 310-task-event-timezone
2021-05-04 11:21:36 -04:00
2b9cee6b89
Update database to include timezone and change all points where we set the time on an event to be utc time. If we get something in the database with a timezone, it will display properly on the front end, but by default everything will be put in the database in UTC
2021-04-29 10:25:28 -04:00
39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204
2021-04-26 10:27:32 -04:00
a17e1bfaca
When completing a form in a test, check whether workflow is standalone.
...
Do not set study_id when workflow is standalone.
*** Note the comment about passing in workflow_spec. We should be passing in a workflow, not a workflow_spec.
2021-04-26 08:50:46 -04:00
6c98e8a2f4
removed duplicate code
2021-04-26 08:47:03 -04:00
277beb345f
Merge pull request #290 from sartography/auto-set-primary-bpmn-142
...
Auto set primary bpmn #142
2021-04-16 13:36:02 -04:00
8953637466
moved the minimal_bpmn method to base_test
2021-04-15 13:28:03 -04:00
69396f9888
Modified base_test restart_workflow_api to accept and pass on the new delete_files argument when restarting a workflow
2021-04-15 11:28:35 -04:00
2100f27976
fixing the api.yml file which was starting to throw errors when updating the libraries.
...
Seems that sqlalchemy now has a hard time incrementing sequences, so putting in a fix for this.
Upgrading many of our libraries, to avoid any disconnects as we try to handle security patches from these automated bumps.
2021-04-02 17:10:05 -04:00
15c64c862e
Adding an argument to update task that will allow it to complete all remaining tasks through an "update_all" flag,
...
this will allow us to remove some fairly complex logic from the front end that isn't behaving properly.
2021-03-12 20:41:07 -05:00
003bf2f9b9
Remove Approvals per ticket 183
2021-02-16 09:05:29 -05:00
5921ce9f10
Merge branch 'dev' into 152-workflow-spec-pull
2021-01-21 12:30:43 -05:00
bfb3871671
Added method for restart_workflow_api. Pulled out some common code with get_workflow_api.
2021-01-19 15:27:44 -05:00
6a9e6d3570
Restart workflow without form data. Committing so Dan can check it out
2021-01-14 15:32:14 -05:00
442a4524c4
Test for new functionality and code coverage
2021-01-12 10:18:35 -05:00
ee3ee9fd4a
Added tests to cover most of the use cases and code, and a bunch of stuff to make the mocks happy
2020-12-14 10:27:40 -05:00
9eea26e019
add workflow_sync test
2020-12-11 08:34:59 -05:00
92595e3c42
base_test didn't 'know' about the DataStoreModel so it wasn't creating the data_store table, causing a lot of problems after the initial setup/teardown
2020-11-10 09:33:54 -05:00
4dc98a6b6b
Injects current user into task data.
2020-08-21 13:34:37 -04:00
50b207307a
Merge branch 'dev' into feature/update_study_status_latest
2020-07-31 14:26:24 -06:00
5d23223e51
New study status update
2020-07-30 21:03:11 -06:00
faba0f55ab
Adds AdminSession model and refactors impersonation methods to use it.
2020-07-30 12:40:53 -04:00
aa0f24bd33
Fully deletes users from g in test tearDown
2020-07-30 10:40:06 -04:00
1b0ebecbf4
Uses Flask session to store impersonation state.
2020-07-30 10:17:02 -04:00
d301e9e6fa
Adds list_users endpoint. Adds admin impersonate uid parameter to user endpoint. Adds some utility methods to user service. Refactors authentication tests.
2020-07-29 22:47:47 -04:00
f897ee3aea
Merge branch 'feature/approvals_dashboard_prototype' into feature/admin_impersonations
2020-07-29 10:32:46 -04:00
0ea4c13d09
Convert protocol builder status to always be in lower case in order to better match the front end. And also fixing an issue with the multi_instance that is oddly broken suddenly, and I don't know why.
2020-07-28 17:16:48 -04:00
4d11fc04a0
dropping the "read_only" flag in favor of a "do_engine_steps" flag, which more clearly defines what is happening.
2020-07-28 13:51:29 -04:00
f15626033d
Allow the workflow to be requested without making changes to the workflow - requires that you specify a read_only flag of true, otherwise it assumes that you want a fully prepared workflow with the next ready task set to run.
2020-07-28 13:33:38 -04:00
452f2c3723
Building out a user service for getting the current user, it will provide a number of functions, one of which will allow administrative users to impersonate other users in some circumstances (but will assure that we log events correctly when an impersonation occures)
2020-07-27 14:38:57 -04:00
3d9eeab502
Add a few more details to the workflow metadata model.
2020-07-21 15:18:08 -04:00
d85ca1ce51
Whenever a workflow is loaded or updated, add events to the TaskEvent table with assignments for the next set of ready tasks, along with who should complete those tasks.
...
Add the lane information to the Task model.
Drop the foreign key constraint on the user_uid in the task log, as we might create tasks for users before they ever log into the system.
Add a new endpoint to the API called task events. It should be possible to query this and get a list of all tasks that need a users attention.
The task events returned include detailed information about the workflow and study as sub-models
Rename all the actions in event log to things that are easier to pass over the api as arguments, make this backwards compatible, updating existing names in the database via the migration.
Throughly test the navigation and task details as control of the workflow is passed between two lanes.
2020-07-14 22:16:44 -04:00
a48322ef6a
Partial work on CR Connect Roles.
...
Adding checks in the API to assure the correct person is completeing a task based on the task's lane.
Adding lane to the Navigation item.
Adding a check to assure that unique user ids can be identified using task.data
Added some additional ldap entries to make testing and development easier.
Removed a big chunk of duplicate code from task_tests_api
Modified some of the helper functions to make it easier to test as specific users.
Added some additional bpmn models to the tests for testing lanes and roles.
2020-07-14 10:29:25 -04:00
a302208890
Updating test for study with approvals
2020-07-07 08:32:41 -06:00
1844c93919
STG-26 - basic test case for a looping task
...
Criteria :
task.multi_instance_type == 'looping'
to terminate, use the standard endpoint for submitting form data with a query variable of terminate_loop=true
Will likely need two buttons:
"Submit and quit"
"Submit and add another"
or something similar
2020-06-17 11:35:06 -04:00
e3126620b3
Eschews obfuscation
2020-06-12 14:09:08 -04:00
561e254315
Prevents non-admin users from editing each others' tasks. Fixes bug where test user uid was not being set from token. Moves complete form and get workflow API test utility methods into BaseTest.
2020-06-12 13:46:10 -04:00
f51e5e4e6b
Adds tests for approval counts and all approvals endpoints
2020-06-11 16:39:00 -04:00
768f14b3ac
Cleans up console logging
2020-06-11 13:42:44 -04:00
4e006e2653
Clear out the g.user between tests.
2020-06-11 11:49:07 -04:00
cccff9b856
Fixes broken unit tests. But still broken.
2020-06-11 11:29:58 -04:00
87e2379871
Merge branch 'rrt/dev' into feature/swagger_admin_authentication
2020-06-08 10:30:16 -04:00
4727d87adb
Hooking up emails into process - start
2020-06-04 20:37:28 -06:00
c4a84ac509
Work in progress: Trying to get Swagger to use verify_token_admin to protect admin endpoints. Not working for some reason, though.
2020-05-31 18:01:08 -04:00
be9b613bbb
Refactors user authentication endpoints so we can use the Swagger UI in production mode
2020-05-31 16:49:39 -04:00
Dan
mike cullerton
Kelly McDonald
Mike Cullerton
Aaron Louie
Carlos Lopez