fce9166c4a
Do not require users to be admins for viewing the document directory tab.
2021-06-09 09:51:30 -04:00
9c4994581d
Merge pull request #324 from sartography/modify-infinite-loop-312
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Modify infinite loop #312
2021-06-08 10:30:13 -04:00
d657744816
Added optional `validate_study_id` parameter to the validation api endpoint.
2021-06-03 14:17:12 -04:00
e9fe555e05
New `/datastore/file/{file_id}` endpoint definition
2021-06-01 13:49:21 -04:00
415964806d
Merge pull request #307 from sartography/standalone-set-default-false-323
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Set the default for the `standalone` parameter to `false`. #323
2021-05-14 12:33:33 -04:00
99da502912
Merge branch 'dev' into 321-Markdown-Macro
2021-05-14 12:32:41 -04:00
6b242c07e2
Set the default for the `standalone` parameter to `false`.
2021-05-06 11:54:04 -04:00
cbd1d01203
Add URL to the study_info('documents') script
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fixes #321 - I merged in branches that fix #320 and #297
320-add-default-for-file-data-get
297-filename-in-documents
2021-05-05 11:30:08 -04:00
34759a2f3d
Merge branch 'dev' into feature/performance-refactor
2021-05-04 11:30:13 -04:00
77d9bfca43
Merge pull request #296 from sartography/launch-workflow-outside-study-204
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Launch workflow outside study 204
2021-05-04 11:16:08 -04:00
a719cf4bf9
When retrieving the study, only update the status of underlying workflows if specifically requested.
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Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
2021-04-30 11:55:12 -04:00
24c818bf31
Added study_id to workflow_api
2021-04-29 14:29:21 -04:00
248ca6a33a
Don't require people to be admins just so they can see the list of documents, or we get recursive loads on Kelly's non admin account (and everyone elsees)
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todo: Create a ticket to assure we don't get in an infinite loading loop.
2021-04-27 12:14:37 -04:00
39fcab3730
Merge branch 'dev' into launch-workflow-outside-study-204
2021-04-26 10:27:32 -04:00
5936b2e8ef
Created 2 api endpoints; one to get a workflow from a workflow spec, and one to list all standalone workflow specs.
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Also added `standalone` argument to workflow_spec schema properties
2021-04-26 08:27:24 -04:00
cf051a7d4f
Merge branch 'dev' into 277-Document-pane
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# Conflicts:
# crc/api/file.py
2021-04-21 14:09:44 -04:00
ecff7d20d3
Adding a test for the new endpoint and cleaning up the API documenation
2021-04-21 14:00:19 -04:00
e2197ddab9
Changes to support the frontend data pane
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fixes #277 and requires frontend branch 277-document-pane
2021-04-20 08:12:27 -04:00
4615649938
Added delete_files argument to the workflow restart api endpoint
2021-04-15 11:21:51 -04:00
949f3be403
give an endpoint to return all files associated with a study
2021-04-12 12:23:33 -04:00
2100f27976
fixing the api.yml file which was starting to throw errors when updating the libraries.
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Seems that sqlalchemy now has a hard time incrementing sequences, so putting in a fix for this.
Upgrading many of our libraries, to avoid any disconnects as we try to handle security patches from these automated bumps.
2021-04-02 17:10:05 -04:00
ded11ddd82
fixing a code smell
2021-03-26 20:25:34 -04:00
14386b8ba9
Merge pull request #264 from sartography/bug/243_complete_all
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Bug/243 complete all
2021-03-14 12:34:55 -04:00
15c64c862e
Adding an argument to update task that will allow it to complete all remaining tasks through an "update_all" flag,
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this will allow us to remove some fairly complex logic from the front end that isn't behaving properly.
2021-03-12 20:41:07 -05:00
14e62a7ec2
Modify the send_email api endpoint (in Configurator Tools section) to accept subject, message, and data.
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Subject, address and message are required.
Data is not required.
Message is in the body of the request.
Subject, address, and data are in the query string.
2021-03-11 11:10:10 -05:00
aac3d5c16e
Bug #255 , this requires the front end to pass in the name of the task, when doing a lookup. This will prevent a bug where we have multiple user tasks, with enum fields that set the same variable, but use different lookup tables to populate the dropbown or search feature.
2021-03-01 14:54:04 -05:00
003bf2f9b9
Remove Approvals per ticket 183
2021-02-16 09:05:29 -05:00
e1532a90c9
New api endpoint for restarting a workflow. Unsure if I needed the responses section. **Dan, can you check this?**
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Also, removed clear_data and reload_spec as parameters for standard get workflow endpoint.
2021-01-19 15:00:39 -05:00
6a9e6d3570
Restart workflow without form data. Committing so Dan can check it out
2021-01-14 15:32:14 -05:00
adc4dc4453
redid the api a bit so that nothing was using open security - added a new endpoint for getting a workflow spec that uses the alternate API_TOKEN security and leave the original endpoint as it was.
2020-12-11 12:03:41 -05:00
3a1160efac
refactored calls into a service
2020-12-11 11:41:32 -05:00
993c7bc76e
fixed error on api.yml from search / replace
2020-12-11 08:29:37 -05:00
3f56dfe484
Move all workflow sync stuff into new file
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Make changes to api naming scheme
add some error checking around endpoints for missing/invalid endpoints
2020-12-10 10:46:23 -05:00
e377a05dea
Add some punctuation
2020-12-09 13:50:52 -05:00
c57b17df1e
Add a robust way of adding an API key, update examples and documentation for swagger API and add the ability to completely sync the local system from the remote system.
2020-12-09 12:13:17 -05:00
0e1aa59fa1
Make a change to make sure that if there is a new file locally that is not present remotely when we pull from the remote, the new local file gets deleted.
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Also: add several things to the requirements.txt that should have been there in the first place.
2020-12-08 13:42:01 -05:00
f26a8615a4
Get more file details so we can fill out everything locally and also add a method to download the file by md5_hash
2020-12-07 08:49:38 -05:00
d41d018fe3
For a given workflow - find the files that are different from a remote endpoint for the same workflow
2020-12-04 11:49:07 -05:00
0f59d3de09
add endpoint that gets a record for all changed /new workflow_specs at a remote endpoint
2020-12-03 14:45:57 -05:00
92aa1b971d
commit before removing big long SQL
2020-12-02 16:04:00 -05:00
66693d9f3a
Removing datastore script, as it isn't used in the api at all.
2020-11-18 15:06:28 -05:00
c62b73a539
drop some of the test-only api endpints and rework the tests so they aren't needed
2020-11-18 15:04:36 -05:00
70425eee0d
Add last_updated field - change the api signature to be closer to what we need going forward, but retain the old methods for testing the script get/set through the API
2020-11-13 12:03:29 -05:00
7c2c725840
save before changing how API works
2020-11-13 09:58:21 -05:00
9a4d167dcd
Add in api changes
2020-11-11 09:44:58 -05:00
66e49a347a
Minor tweaks to the eval endpoint, which should take both the expression and the data as one data structure.
2020-08-20 16:13:48 -04:00
04399eec2a
Accepting None for primary_investigator_id
2020-08-04 11:38:46 -06:00
cd9376cf8e
Adding back ability to update studies
2020-08-04 09:13:24 -06:00
50b207307a
Merge branch 'dev' into feature/update_study_status_latest
2020-07-31 14:26:24 -06:00
4fcba113b8
Fixing tests
2020-07-31 11:49:04 -06:00
Dan
mike cullerton
Kelly McDonald
Mike Cullerton
Carlos Lopez