Dan Funk
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3eb1167b8e
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Found a few errors in the sqlalchemy file definition that was causing failures, and had some consistency problems with the IRB Categories file name. The API was bailing out because we had restricted file types to bpmn,svg,or dmn in the connexion config file, I don't restrict this anymore we have plenty of checks elsewhere. Adding xlrd as a dependency - this didn't fail till a push to production.
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2020-03-20 08:21:21 -04:00 |
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Dan Funk
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83d859fd3a
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Just merging stuff real quick.
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2020-03-18 17:03:36 -04:00 |
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Dan Funk
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5e3fdaaa94
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New set of "Tools" api endpoints, that provides a way to quickly render markdown or word documents by uploading json data and a template to populate.
Improved Error messages / Error processing. You can now just throw an APIError anywhere, and it will be properly serialized and returned.
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2020-02-29 17:22:38 -05:00 |
Aaron Louie
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4534b0c2df
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Updates study model to better match Protocol Builder. Deletes all migrations and starts over, since Alembic has problems migrating changes to existing column constraints.
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2020-02-28 11:14:30 -05:00 |
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Aaron Louie
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3ef4860391
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Adds user_uid and investigator_ids fields to Study. Gets studies from protocol builder and adds them if they aren't already in the database
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2020-02-26 18:06:51 -05:00 |
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Dan Funk
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1e8a095760
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Fixing a rogue comma that made something a tuple and not a string, which drives me CRAZY.
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2020-02-25 12:01:25 -05:00 |
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Dan Funk
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a642593e3d
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Adding support to handle Single Sign On (Shibboleth) authentication using Flask SSO and an attribute map that has worked in the past with UVA's implementation. Aside from the new user endpoint, nothing requires authentication, but soon everything will expect it. I'm setting up a backdoor we can use for development and staging that will cause a round-robin affair that should make this relatively painless. Dropped "RestException" as we had two ways or raising errors, and that was silly.
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2020-02-18 16:38:56 -05:00 |
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Dan Funk
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1d24ebe382
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Provide a script for generating word documents from template files. Refractored file managment into a service to make it easier to programatically add files. Modified the workflow_processor to inject the study_id and workflow_id into the running workflow so that this meta-information is avialable at the task level.
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2020-02-10 16:19:23 -05:00 |
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Dan Funk
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9bd93748be
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Returning better cleaner information about workflow with the workflow endpoint. Removes the get_all_tasks and get_user_tasks endpoints as tasks are returned with the workflow. Workflow endpoint also includes the last task and next_task, which may or may not be user tasks. The task "type" returned is now the class name of the task_spec, rather than just the word "task".
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2020-02-07 11:34:44 -05:00 |
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Dan Funk
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37df0bf8f4
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Converting this over to using Postgres. See the new postgres directory for a docker container to spin this up. Tests and development databases are the same, will try and get this corrected at some point.
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2020-02-04 14:25:17 -05:00 |
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Aaron Louie
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93a97e8835
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Updates packages
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2020-01-31 11:32:46 -05:00 |
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Dan Funk
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95b75f864d
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You can now add multiple files to a workflow spec, and if properly linked, you can associate a DMN file with a BPMN to process decision tables.
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2020-01-23 15:32:53 -05:00 |
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Dan Funk
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532c00fde5
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Upgrade to latest spiffworkflow
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2020-01-23 11:38:26 -05:00 |
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Aaron Louie
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b63f27f1f0
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Updates packages.
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2020-01-22 16:50:54 -05:00 |
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Aaron Louie
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fe15799ee1
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Adds type hinting to db and session to fix Pycharm autocomplete. Replaces db.session with session.
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2020-01-14 11:45:12 -05:00 |
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Dan Funk
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6361e94af5
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Allow submitting data and progressing to the next task in a workflow.
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2020-01-14 11:02:44 -05:00 |
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Dan Funk
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27c3b66a21
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ReadTheDocs initial setup and configuration.
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2020-01-07 13:40:31 -05:00 |
Aaron Louie
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e75da611ca
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Adds endpoints for creating and updating a Study.
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2020-01-03 11:44:24 -05:00 |
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Dan Funk
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0b71833946
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Adding file management. Files are stored in the database along with basic meta data.
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2019-12-27 13:50:03 -05:00 |
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Dan Funk
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9861f6baf3
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Lots and lots of random stuff as I organize code and get things to make sense.
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2019-12-18 14:02:17 -05:00 |
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Dan Funk
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e8ac73888b
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Creating a dependency on the SpiffWorkflow fork we created. and placing the command line script into this code base and demonstrating that our workflow processor works at least on that level. Removing all kinds of garbage that had piled up before to keep this thing clean.
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2019-12-11 11:45:44 -05:00 |
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Dan Funk
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b279246e80
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Setting up tests to work correctly when verifying endpoints.
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2019-11-21 11:36:32 -05:00 |
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Dan Funk
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358860918f
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Updates to the README and removing a problematic dependency
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2019-11-20 17:00:02 -05:00 |
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Aaron Louie
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4fdc2a05c8
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Fixes broken pipenv files
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2019-11-19 16:53:46 -05:00 |
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Aaron Louie
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983ffb4309
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Adds basic Flask, Connexion, and SpiffWorkflow structure
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2019-11-19 15:57:46 -05:00 |