Commit Graph

319 Commits

Author SHA1 Message Date
Carlos Lopez 73400ed6c7 Adding proper tests for files publishing 2020-07-17 16:59:25 -06:00
Aaron Louie e82532aad8 Updates IND workflow spec. Fixes validation process to return lookups for enum values. 2020-07-17 11:51:21 -04:00
Aaron Louie 7cbafe966e Adds form key and pool name 2020-07-16 17:59:56 -04:00
Aaron Louie 9570e19b09 Fixes failing test 2020-07-16 14:02:29 -04:00
Aaron Louie d67105332f Merge branch 'dev' into feature/lanes_and_roles 2020-07-16 14:00:53 -04:00
Aaron Louie d0279a11e5 Fixes failing unit test 2020-07-15 17:44:46 -04:00
Aaron Louie 040a95281e Updates package hashes 2020-07-15 17:09:34 -04:00
Aaron Louie 08fba1a4dc Merge branch 'dev' into feature/dynamic_enum_list 2020-07-15 13:09:02 -04:00
Dan Funk c7662315aa Assure that any errors that occur during the do_engine_steps is correctly captured and returned to the end user or configurator with enough information for them to act on. 2020-07-15 11:16:35 -04:00
Dan Funk d85ca1ce51 Whenever a workflow is loaded or updated, add events to the TaskEvent table with assignments for the next set of ready tasks, along with who should complete those tasks.
Add the lane information to the Task model.
Drop the foreign key constraint on the user_uid in the task log, as we might create tasks for users before they ever log into the system.
Add a new endpoint to the API called task events.  It should be possible to query this and get a list of all tasks that need a users attention.
The task events returned include detailed information about the workflow and study as sub-models
Rename all the actions in event log to things that are easier to pass over the api as arguments, make this backwards compatible, updating existing names in the database via the migration.
Throughly test the navigation and task details as control of the workflow is passed between two lanes.
2020-07-14 22:16:44 -04:00
Dan Funk 9077ff3ebf It is not possible to use task_data for an auto-complete field. It's too expensive an operation to provide that feature on the backend, and the data already fully resides on the front end anyway. Task-data can be used to populate enum fields if needed, so it can populate dropdowns, radios and checkboxes, just not auto-complete. 2020-07-14 11:38:48 -04:00
Dan Funk a48322ef6a Partial work on CR Connect Roles.
Adding checks in the API to assure the correct person is completeing a task based on the task's lane.
Adding lane to the Navigation item.
Adding a check to assure that unique user ids can be identified using task.data
Added some additional ldap entries to make testing and development easier.
Removed a big chunk of duplicate code from task_tests_api
Modified some of the helper functions to make it easier to test as specific users.
Added some additional bpmn models to the tests for testing lanes and roles.
2020-07-14 10:29:25 -04:00
Dan Funk f83995a692 Partial work towards roles and lane support 2020-07-14 09:01:29 -04:00
Aaron Louie 07066b8a16 Looks up enum options from task data 2020-07-13 17:46:28 -04:00
Aaron Louie 3c8e1e5c37 Tests for presence of data property in enum options 2020-07-13 11:02:29 -04:00
Dan Funk ff7c30b879
Merge pull request #138 from sartography/fix/cleanup_todos
Cleanup pending  TODOs
2020-07-10 08:26:47 -04:00
Dan Funk 6a79fb3581 There may be multiple investigators of the same type that come back from the protocol builder, adding some tests and additional code to handle this, but still keep the list flat, currently appends a number to the investigator type when there is more than one. 2020-07-07 17:16:33 -04:00
Carlos Lopez b4e127b3b7 Cleaning properly previous versions 2020-07-07 08:32:41 -06:00
Carlos Lopez a302208890 Updating test for study with approvals 2020-07-07 08:32:41 -06:00
Carlos Lopez c7b864f9c7 Cleaning up old notes 2020-07-07 08:32:20 -06:00
Dan Funk 8a66128189 Bug fixes after bumping the version of Spiffworlflow to the latest - which has fixes for sequential multi-instance. 2020-07-06 15:34:24 -04:00
Dan Funk 419c05e46c
Merge branch 'dev' into fix/more-info-in-exceptions 2020-07-06 12:51:24 -04:00
Dan Funk a5cef8775e * Modifying the StudyInfo script to return both "investigators" and "roles", the investigators argument will return only the current active investigators according to the protocol builder. The "roles" argument returns all possible roles - it is what "investigators" use to be.
* The Task.title returned to the front end will now attempt to process the "display_name" property for dot-notation syntax, making it possible to use this for multi-instance tasks,
  but will work in all cases where we want he title to change based on values in the data model.
* Fixing a bug the test_study_api where it wasn't updated when we made recent changes to the different states of a study.
*
2020-07-06 12:09:21 -04:00
Carlos Lopez 817333f26e Adding proper exception information 2020-07-02 16:10:33 -06:00
Dan Funk 93bf46354b A last minute change to make the API a little clearer and cleaner broke some tests. 2020-06-30 11:12:28 -04:00
Dan Funk f183e12fe5 Provides some basic tools for getting additional information about a lookup field.
Adds an optional 'value' parameter to the lookup endpoint so you can find a specific entry in the lookup table.
Makes sure the data attribute returned on a lookup model is a dictionary, and not a string.
Fixes a previous bug that would crop up if double spaces were used when performing a search.
2020-06-30 10:34:16 -04:00
Dan Funk d3ce1af1ce Provides some basic tools for getting additional information about a lookup field.
Adds an optional 'id' parameter to the lookup endpoint so you can find a specific entry in the lookup table.
Makes sure the data attribute returned on a lookup model is a dictionary, and not a string.
Fixes a previous bug that would crop up in double spaces were used when performing a search.
2020-06-30 10:00:22 -04:00
Aaron Louie e650a46073 Fixes local testing bug where working directory was sometimes wrong. 2020-06-29 16:41:42 -04:00
Aaron Louie fe61333b7b Fixes typo 2020-06-26 12:31:15 -04:00
Aaron Louie 29b108673d Adds failing test exposing bug with getting data for multi-instance tasks 2020-06-26 11:51:27 -04:00
Dan Funk 150117587e Merge branch 'dev' into feature/parallel_multiinstance_tasks 2020-06-25 23:20:38 -04:00
Dan Funk fe5a7ddce3 Merge remote-tracking branch 'origin/rrt/dev' into feature/emails-enhancement 2020-06-25 13:29:06 -04:00
Aaron Louie be6dcc7020 Merge branch 'STG-26' into feature/parallel_multiinstance_tasks 2020-06-25 12:55:28 -04:00
Dan Funk 0ca9b9624e Switching to STG-26 for the Spiff Library, and adding a test that demonstrates the failure Aaron ran into yesterday. 2020-06-25 12:44:34 -04:00
Carlos Lopez 5d1ae402b6 Slight refactor on data passed to template rendering 2020-06-24 22:43:44 -06:00
Carlos Lopez a0d877e02f Feedback from PR addressed 2020-06-24 22:23:31 -06:00
Carlos Lopez 5327b469f6 Merge branch 'rrt/dev' into feature/emails-enhancement 2020-06-24 21:46:53 -06:00
Aaron Louie a40adeca3a Merge branch 'dev' into STG-26 2020-06-22 19:57:43 -04:00
Carlos Lopez 91fe5f0cdd Fixing broken test 2020-06-22 14:22:56 -06:00
Carlos Lopez dc5ffd29d0 Refactoring shared code 2020-06-22 14:07:57 -06:00
Dan Funk 6aec15cc7c Shifting to a different model, where the TaskEvents store ONLY the form data submitted for that task.
In order to allow proper deletion of tasks, we no longer merge data returned from the front end, we set it directly as the task_data.
When returning data to the front end, we take any previous form submission and merge it into the current task data, allowing users to keep their previous submissions.
There is now an "extract_form_data" method that does it's best job to calculate what form data might have changed from the front end.
2020-06-19 08:22:53 -04:00
Carlos Lopez e6d74aaa1a Removing extra index when parsing users info 2020-06-18 12:53:50 -06:00
Kelly McDonald 479f6d9647 STG-26
Do rename per conversation, continue to look for ways to implement looping in a way that is re-entrant
2020-06-18 12:01:02 -04:00
Carlos Lopez 4db815a999 Handling incoming values from processor 2020-06-17 21:11:47 -06:00
Carlos Lopez e947f40ec7 Merge branch 'rrt/dev' into feature/emails-enhancement 2020-06-17 20:10:11 -06:00
Carlos Lopez 5ce279b663 Dropping silly pdb statement 2020-06-17 17:36:15 -06:00
Carlos Lopez 896ba6b377 Email relies now on markdown content 2020-06-17 17:00:16 -06:00
Carlos Lopez ddf1f4640c Re-organizing tests file structure 2020-06-17 16:10:06 -06:00
Carlos Lopez 2ce2dc73b5 Rendering proper content & organizing file structure for email tests 2020-06-17 16:09:38 -06:00
Dan Funk 3b57adb84c Continuing a major refactor. Some important points:
* TaskEvents now contain the data for each event as it was when the task was completed.
* When loading a task for the front end, if the task was completed previously, we take that data, and overwrite it with the lastest data, allowing users to see previously entered values.
* Pulling in the Admin branch, as there are changes in that branch that are critical to seeing what is happening when we do this thing.
* Moved code for converting a workflow to an API ready data stricture into the Workflow service where it belongs, and out of the API.
* Hard resets just convert to using the latest spec, they don't try to keep the data from the last task.  There is a better way.
* Moving to a previous task does not attept to keep the data from the last completed task.
* Added a function that will fix all the existing RRT data by adding critical data into the TaskEvent model. This can be called with from the flask command line tool.
2020-06-17 17:11:15 -04:00