95f4592f71
Merge pull request #22 from sartography/feature/workflow_spec_categories
...
Feature/workflow spec categories
2020-03-16 14:00:10 -04:00
cbd8d2f46c
Silences SQLALCHEMY_TRACK_MODIFICATIONS warning
2020-03-16 13:47:17 -04:00
40e12f5ab5
Resolves marshmallow_sqlalchemy.ModelSchema deprecation warning
2020-03-16 13:37:31 -04:00
7d31bc24eb
Attempting to address "FutureWarning: Implicit (flask) JSON serialization" warning
2020-03-16 13:24:15 -04:00
f742be3264
Replaces deprecated assertEquals with assertEqual
2020-03-16 13:05:15 -04:00
a0c35fe8cf
Adds test for updating workflow spec
2020-03-16 12:32:39 -04:00
a98251237b
Adds workflow spec category to API
2020-03-16 12:10:32 -04:00
6af1693bdc
Fixes SonarCloud issue L23. Verifies that study ids match.
2020-03-16 10:37:06 -04:00
0cc98616fd
Merge branch 'master' into feature/workflow_spec_categories
2020-03-16 10:25:03 -04:00
091e422aea
Merge pull request #20 from sartography/feature/delete_study
...
Fixes #11 : adding a delete endpoint for studies. It won't delete stu…
2020-03-16 10:17:02 -04:00
358a485372
Fixes broken test
2020-03-16 09:07:39 -04:00
3885bc7624
Merge remote-tracking branch 'origin/master' into feature/delete_study
2020-03-16 08:49:44 -04:00
cd6a70b747
Fixes code smell issues identified by SonarCloud
2020-03-16 08:31:19 -04:00
f9dbbefe89
Adds status spec to study when workflow is added.
2020-03-16 08:05:30 -04:00
bdd07685c6
Adds status spec when adding a study, and adds/removes workflows from study based on output data from status spec.
2020-03-15 15:54:13 -04:00
e4af6f77d0
Adds is_status flag to workflow_spec, status_spec_id & version to study, and is_active flag to WorkflowApi
2020-03-15 15:52:59 -04:00
779674ab60
Add the ability to upload and request general reference files by name. These will be used across workflows and will frequently contain lookup tables that can be referenced by various script tasks.
2020-03-13 15:03:57 -04:00
b1a6c9b6c7
Adds basic status-setting workflow spec and minimal test
2020-03-13 14:58:07 -04:00
0da07ad9e7
Sets is_status flag on new workflow spec files
2020-03-13 14:57:28 -04:00
902dba7191
Adds is_status flag to workflow specs
2020-03-13 14:56:46 -04:00
bb636d363c
Merge pull request #21 from sartography/feature/task_counts
...
Feature/task counts
2020-03-13 08:59:07 -04:00
05b39df745
Fixes #12 : Catching some specific common errors and re-raising as APIErrors with detailed codes and descriptions to improve debugging. In doing so, improving the error handling in the event a soft-reset causes an immediate error - and resetting to the original version of the specification in these events, to allow users the chance to try a hard reset instead.
2020-03-11 16:33:18 -04:00
f177e33ad6
Tiny tweak
2020-03-11 15:31:23 -04:00
3262833102
Requires login
2020-03-11 15:27:22 -04:00
e977ee9e0d
Updates task counts when getting workflow
2020-03-11 15:16:42 -04:00
bbfe9291e0
Adds endpoint to get workflow stats. Adds a test for the endpoint.
2020-03-11 14:28:53 -04:00
1119bb2b6c
Tests that task counts and events are logged.
2020-03-11 12:35:37 -04:00
be17c2159c
Adds workflow stats and task events models and schemas. Updates workflow stats and logs task completion when task data is updated.
2020-03-10 21:29:57 -04:00
f1b6718068
Adds task counts
2020-03-10 15:46:14 -04:00
e91d7aff2f
Fixes #11 : adding a delete endpoint for studies. It won't delete studies that have workflows, you have to delete those first)
...
Removing the "default" error response from the api.yml, it was all noise.
2020-03-09 15:12:40 -04:00
1cd5c0fb02
Merge pull request #19 from sartography/feature/pb_services
...
Feature/pb services
2020-03-09 14:10:24 -04:00
95750d4fb0
Merge branch 'feature/pb_services' of github.com:sartography/cr-connect-workflow into feature/pb_services
2020-03-09 12:41:42 -04:00
3b39f3875d
Fix data being over-written in the study_info.
2020-03-09 12:41:35 -04:00
c3b244fc7a
Merge pull request #17 from sartography/feature/pb_services
...
Workflow Versioning
2020-03-06 13:59:01 -05:00
c928a6472c
Edits typo
2020-03-06 10:57:24 -05:00
acad0023d2
Fixes a bug in get_study_workflows and adds a test covering it
2020-03-06 10:52:41 -05:00
5bf0eb33d9
Fixes migrations. Will require full database reset.
2020-03-06 09:50:32 -05:00
9fcd6f38f4
Merge remote-tracking branch 'origin/master' into feature/pb_services
2020-03-05 17:13:41 -05:00
e501fb31fd
Cleaning up swagger docs.
2020-03-05 17:10:00 -05:00
bb3f0dc128
Fixing an error on Travis that wasn't showing up locally - can't close a file that never opened.
2020-03-05 16:55:46 -05:00
906bacff6a
Expose a flag on the workflow model in the api to shown if it is using the latest spec. Added a soft_reset and hard_reset onto the workflow endpoint that will allow you to cause a hard or soft reset.
2020-03-05 16:45:44 -05:00
7b21b78987
Workflow Processor will deserialize workflows using the version of the BPMN files used during creation, but allows for both a soft and hard reset - soft resets will use the new workflow without a restart and will retain full history. A hard-reset will restart the workflow from scratch, but will retain the data from the last completed task. Workflows have a complex version number associated with them that is used during the deserialization to find the correct files.
2020-03-05 15:38:30 -05:00
a9890eb050
Merge remote-tracking branch 'origin/master'
2020-03-05 14:21:09 -05:00
e07ad8d21c
Updates training session BPMN files. Fixes PB status enums.
2020-03-05 14:21:03 -05:00
697d930eab
Modify the workflow processor to accept a workflow model - so it can take on more of the responsibilities of updating this model and managing versions.
...
Changing the version information so that it includes the numbers of the files used to generate the serialized workflow.
2020-03-05 13:25:28 -05:00
c0a3bac4f4
missed some test errors in the last push. Just fixing the tests.
2020-03-05 11:23:22 -05:00
70611e2c1d
Adding the version of the specification used to create a workflow to the workflow api endpoint. Though the exact content of this version is likely to change.
...
Split the API specific models out from the workflow models to help me keep this straight.
Added tests to help me understand the errors thrown the and resolution path when a workflow specification changes in the midst of a running workflow.
2020-03-05 11:18:20 -05:00
78b6f040eb
Add the ability to forcibly restart a workflow, while retaining that workflows data.
...
A workflow specification knows it's version number, which is generated by the version of the files that make it up.
A workflow specification version number is the primary file (the lead BPMN) followed by a consistency ordered version each extra file associated with the workflow. A change in any file modifies the specifications version.
2020-03-04 17:08:45 -05:00
d0f0acc8cf
Missing migration.
2020-03-04 13:48:13 -05:00
c5cee4761e
Improve version handling of files. Consolidate more of this logic in FileService. Place the version on the actual data model, not the file model, so the file model remains the same, and we just version the data associated with it.
2020-03-04 13:40:25 -05:00
Aaron Louie
Aaron Louie
Dan Funk