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79 Commits

Author SHA1 Message Date
mike cullerton
39e005dc24 Include user_uid and archived attributes with File and FileSchema 2022-04-21 17:12:29 -04:00
mike cullerton
cf68367085 remove unused code 
cleanup imports
 2022-04-20 11:16:07 -04:00
mike cullerton
fea9c969c2 document => file 
file_refactor => file
 2022-04-20 10:39:19 -04:00
mike cullerton
f75c932194 DocumentModel => FileModel 
document_id => file_id
prep for migration
 2022-04-19 15:10:05 -04:00
mike cullerton
11f9a4dfc2 Add size column back in 2022-04-19 11:35:19 -04:00
mike cullerton
69e4679667 add data_store records to from_document_model method 2022-04-19 07:43:25 -04:00
mike cullerton
9097851ae1 We now store type as a string, not an Enum 2022-04-15 10:23:00 -04:00
mike cullerton
389d2b413e More work on igrations 2022-04-14 18:06:08 -04:00
mike cullerton
efc37ee59f Prepare for migrating data_stores 2022-04-13 08:52:22 -04:00
mike cullerton
a32f9a9458 Fix url link 
This is a temporary fix. Unsure where it will end up
 2022-04-13 08:51:33 -04:00
mike cullerton
bee58ec6d7 Coding style stuff 2022-04-12 13:38:38 -04:00
mike cullerton
0e3b467091 Modified FileSchema to match the new File 2022-04-12 13:38:12 -04:00
mike cullerton
22b3c8547f FileModel => DocumentModel 2022-04-12 13:33:24 -04:00
mike cullerton
525491921f from_models => from_document_model 2022-04-12 13:32:33 -04:00
mike cullerton
7c23d36d7c Add DocumentModel that combines FileModel and FileDataModel 2022-04-12 13:23:50 -04:00
Dan
b72ecb8375 Another re-work to fix 619 - and to assure that we aren't rebuilding the lookup tables too frequently. 2022-02-17 11:59:48 -05:00
Dan
4ec6e403f5 1. Created a UserFileService, so it's clear what we use when for File Services, UserFiles, SpecFiles, and ReferenceFiles each function differently. 
2. Reference Files and Spec Files are written to disk, they do not exist in the database at all.
 2022-02-02 12:59:56 -05:00
Dan
4c00a5762f partial commit - new spec_file_service, and new spec_file_api endpoints that use spec and file name, not file id. 
removed worklow_sync
cleaned up file and workflow models
most of the test are broken.
 2022-01-28 06:42:37 -05:00
Dan
f815add699 1. Add a default directory for the location of SYNC files. 
2. Added a last_updated column to the lookup table
3. The Lookup service now uses the above, and compares it to the actual file date, we can then rebuild the lookup if needed.
4. That 755 migration loads up the models, so when you change the models, the migration starts to fail.  Not really sure what to do here, but modify the migration while we are in process.
 2022-01-20 13:05:58 -05:00
mike cullerton
b99ed73951 Remove unused imports 2022-01-12 15:00:26 -05:00
mike cullerton
4df2ed6ce4 *** WIP *** 
Failing tests, and missing functionality.
Committing to get stuff on Github.
 2022-01-11 15:30:22 -05:00
mike cullerton
dc27f795c8 *** WIP *** 
Committing because it is Friday afternoon, and my computer is acting flaky
 2022-01-07 15:34:51 -05:00
Dan
5429e7da7d All enumerated lists used in web forms should contain a single value, not a dictionary of value/labels. 
Removing the spreadsheet.value.column and data.value.column so we just have value.column for both.
Improving the __str__ function in the ApiError class, to make debugging a little easier.
Adding a "validate_all" flask command, to help us track down any issues with current workflows in production (use this in concert with sync_with_testing)
Fixed logs of tests.
removed fact_runner.py, a very early and crufty bit of code.
 2021-10-19 10:13:43 -04:00
Dan
c3995bfc3e Another try at getting the url correct. This paired with an additional setting on the server maybe. 2021-10-01 14:25:00 -04:00
Dan
5924ee48f4 One more try at getting the currect url. 2021-09-30 16:56:27 -04:00
Dan
e002ffd363 Fixing a broken test. 2021-09-30 10:30:58 -04:00
Dan
8a4a53f028 Assure that the field type provided is supported. Catches errors such as adding a custom field type of 'text_area' rather than "textarea" 2021-09-29 14:05:45 -04:00
Dan
4b591a076f Adding importlib-resournces as a dependency, which is suddenly failing on Travis, likely due to different versions of Python as I try to upgrade to 3.9 2021-09-21 14:36:57 -04:00
mike cullerton
3d7dadc319 Model changes and revision file for task_spec column to file and data_store models 2021-08-26 10:36:10 -04:00
mike cullerton
b0cf74fa3d Merge branch 'dev' into add-by-user-61 
# Conflicts:
#	tests/files/test_files_api.py
 2021-07-07 10:46:50 -04:00
mike cullerton
c11b5cfb29 Add user_uid to api output 2021-07-07 08:18:02 -04:00
mike cullerton
23be257db0 Add user_uid column to file_data table 2021-07-06 17:07:47 -04:00
Dan
cafdc4d100 Removing an unneeded modification to the database structure for lookup tables. 2021-07-06 14:02:07 -04:00
Dan
1b1a994360 Refactoring Reference files to use the lookup table, rather than parsing the results directly out of the spreadsheet, or attempting to cache them. 
Adding a DocumentService to clean up the FileService, and get Documents well seperated, as it seems likely be pulled out or seperated in the future, there is now a Documents api file as well, for the same reason.
Some other minor changes are just fixing white space to assure our code is linting correctly.
I removed _create_study_workflow_approvals from the base test, as we don't use approvals like this anymore.
 2021-07-06 13:10:20 -04:00
Dan
61ad371680 Clean up the file api so we don't have a bunch of extra stuff in there. Just include the raw data from the document spraedsheet if it is available. 2021-06-22 15:08:08 -04:00
Dan
1f3febe2df Fix the panda warnings, which means we only support xlsx files now. 
Include the document details when reutnring a file from the file model.
Improve the validation of file form elements.
 2021-06-22 14:58:52 -04:00
Dan
59f605c3df Prefer tasks that share a parent over just the the next available task when returning the next_task in the workflow processor. 2021-06-08 08:03:14 -04:00
Dan
a1bb30e689 Switching from using "default" to "server_default" for all default time settings, and running migrations so that this is set at the database level rather than in python, to hopefully correct some issues with dates being 4 hours in the future. Having a very hard time replicating this issue locally. 2021-05-14 12:28:50 -04:00
Dan
a719cf4bf9 When retrieving the study, only update the status of underlying workflows if specifically requested. 
Record the size of a file in the database for quick access (this helps with a frontend refactor, so it isn't downloading the file just to see it's size)
Cleaning up the timing/performance metric reporting to make it easier to read.
Fixing a bug that prevented non-admins for getting the document-directory
 2021-04-30 11:55:12 -04:00
Dan Funk
21e95b106d
Merge pull request #295 from sartography/299-document-datastore 
Add file_data_get and file_data_set functions that can be accessed in…
 2021-04-26 12:49:46 -04:00
Kelly McDonald
40ee20ecca Add file_data_get and file_data_set functions that can be accessed in a bpmn script function 
Fixes #299
 2021-04-26 09:55:28 -04:00
Kelly McDonald
e2197ddab9 Changes to support the frontend data pane 
fixes #277 and requires frontend branch 277-document-pane
 2021-04-20 08:12:27 -04:00
Dan
aac3d5c16e Bug #255, this requires the front end to pass in the name of the task, when doing a lookup. This will prevent a bug where we have multiple user tasks, with enum fields that set the same variable, but use different lookup tables to populate the dropbown or search feature. 2021-03-01 14:54:04 -05:00
Kelly McDonald
da0af14724 Changes to enable front-end changes 
Added a human readable name to created user

added last updated task time and name,

added is_review on the workflow which is triggered by a swimlane with a name present.

Notably - it does NOT update or change any of the performance concerns that we were having with this.
 2021-02-10 11:58:19 -05:00
Dan Funk
9a5c1d7cfb I may have finally wrapped my head around full text search in python. Now properly using an index based on simple rather than english dictionary which has far fewer stop words and stemming processes and plays much better to the type ahead search we are trying to provide. 
Stop words are no longer excluded, so "other" is a valid search and gets a result.
 2020-08-13 18:13:41 -04:00
Dan Funk
9077ff3ebf It is not possible to use task_data for an auto-complete field. It's too expensive an operation to provide that feature on the backend, and the data already fully resides on the front end anyway. Task-data can be used to populate enum fields if needed, so it can populate dropdowns, radios and checkboxes, just not auto-complete. 2020-07-14 11:38:48 -04:00
Dan Funk
f183e12fe5 Provides some basic tools for getting additional information about a lookup field. 
Adds an optional 'value' parameter to the lookup endpoint so you can find a specific entry in the lookup table.
Makes sure the data attribute returned on a lookup model is a dictionary, and not a string.
Fixes a previous bug that would crop up if double spaces were used when performing a search.
 2020-06-30 10:34:16 -04:00
Dan Funk
d3ce1af1ce Provides some basic tools for getting additional information about a lookup field. 
Adds an optional 'id' parameter to the lookup endpoint so you can find a specific entry in the lookup table.
Makes sure the data attribute returned on a lookup model is a dictionary, and not a string.
Fixes a previous bug that would crop up in double spaces were used when performing a search.
 2020-06-30 10:00:22 -04:00
Dan Funk
bbcbfef1ba Fixing the migrations so I don't break the universe. 2020-06-04 10:09:36 -04:00
Dan Funk
217ecfc911 When you can't delete a file, mark it as archived. Don't include archived files in new approval requests. 2020-06-03 17:34:27 -04:00