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317 Commits

Author SHA1 Message Date
Dan
4ba122fff3 WIP - completely broken. 2022-02-07 09:12:11 -05:00
Dan
2383c7d76d WIP - lots of random changes, trying to swtich over 2022-02-04 14:50:31 -05:00
Dan
6765afbd02 WIP - Move the categories and specifications out of the database. 2022-02-04 13:51:39 -05:00
Dan
4ec6e403f5 1. Created a UserFileService, so it's clear what we use when for File Services, UserFiles, SpecFiles, and ReferenceFiles each function differently. 
2. Reference Files and Spec Files are written to disk, they do not exist in the database at all.
 2022-02-02 12:59:56 -05:00
Dan
4c00a5762f partial commit - new spec_file_service, and new spec_file_api endpoints that use spec and file name, not file id. 
removed worklow_sync
cleaned up file and workflow models
most of the test are broken.
 2022-01-28 06:42:37 -05:00
Dan
f815add699 1. Add a default directory for the location of SYNC files. 
2. Added a last_updated column to the lookup table
3. The Lookup service now uses the above, and compares it to the actual file date, we can then rebuild the lookup if needed.
4. That 755 migration loads up the models, so when you change the models, the migration starts to fail.  Not really sure what to do here, but modify the migration while we are in process.
 2022-01-20 13:05:58 -05:00
mike cullerton
68820c67cb Removed (almost) all references to WorkflowSpecDependencyFile 
(There is still a call in the lookup service, but we need to decide how to fix that)
 2022-01-19 16:12:54 -05:00
mike cullerton
68ac056457 Merge branch 'dev' into files-to-filesystem-572 2022-01-18 08:18:14 -05:00
mike cullerton
b99ed73951 Remove unused imports 2022-01-12 15:00:26 -05:00
Dan
e67a1554ea Always but always but ALWAYS, use server_default=func.now() when setting up a datetime field we autopopulate. 2022-01-12 12:33:59 -05:00
Dan
d346589e07 1. added the ability to filter on level and user. 
2. added a total to the response, so you can see what the total count of users is.
3. adding user_uid to the task_log table.
 2022-01-12 08:58:50 -05:00
mike cullerton
4df2ed6ce4 *** WIP *** 
Failing tests, and missing functionality.
Committing to get stuff on Github.
 2022-01-11 15:30:22 -05:00
Dan
7176452fe3 forgot the migration, also fixing an error in the TaskLogQuerySchema. 2022-01-10 13:26:16 -05:00
Dan
962d05c875 1. Created a TaskLoggingService to encapsulate what we are doing with Task Logging through BPMN Script calls and API calls from the front end. 
2. Added two api endpoints that will allow us to get all the logs for a specific workflow or study.
3. Assured that requests for logs are paginated, sortable, and can be limited to a specific code if needed.
4. Assure that we only use logging levels that match the log levels of Python.
 2022-01-10 13:16:54 -05:00
mike cullerton
dc27f795c8 *** WIP *** 
Committing because it is Friday afternoon, and my computer is acting flaky
 2022-01-07 15:34:51 -05:00
mike cullerton
86a6039dc8 *** WIP *** 
**Many** tests are failing!

Committing so I can merge dev into this branch
 2022-01-06 11:46:54 -05:00
Dan
ad9a480f93 Merge remote-tracking branch 'origin/dev' into waiting-workflow-errors-566 2021-12-13 13:05:02 -05:00
alicia pritchett
cdaad5dcc0 Allow 'none' for progress_status 
Well this fixes tests but also, I dont think you necessarily have this right off the bat if you havent done anything in a study, which i handle on the frontend. so null is fine
 2021-12-13 12:34:32 -05:00
alicia pritchett
8b27423172 Updating study model schema to include Progress Status 2021-12-13 12:29:15 -05:00
mike cullerton
acbb8898e4 Merge branch 'more-study-statuses-562' into waiting-workflow-errors-566 2021-12-10 16:52:07 -05:00
mike cullerton
f748fa3db8 Removed unused imports 2021-12-10 16:48:28 -05:00
mike cullerton
6d09aa1817 We moved the new statuses to a new column and created a separate enum class for them. 
They really are sub_statuses of the in_progress status
 2021-12-10 15:57:02 -05:00
mike cullerton
52baf25459 In WorkflowService.do_waiting, if a workflow causes an exception, change its status from waiting to erroring so we don't continue to call it in do_waiting. 2021-12-09 15:33:39 -05:00
mike cullerton
6db9cdabc7 New study statuses 2021-12-08 10:50:30 -05:00
Dan Funk
0cfa59bfea
Merge pull request #429 from sartography/chore/clear-form-data-553 
Fixes #553 - Don't load Form data
 2021-12-08 10:37:44 -05:00
mike cullerton
db1f3ba6ab Model and schema for new StudyCreator api endpoint 
Update StudyModel to use new model
 2021-12-06 14:36:34 -05:00
alicia pritchett
7524e97c9a Fixes #553 - Don't load Form data 
adds an extension so that you can opt to clear out form data on a given task
 2021-12-01 16:11:52 -05:00
mike cullerton
6d548c2a74 *** WIP *** 
Committing to work on another ticket
There are TODOs in study_service
 2021-11-05 09:59:14 -04:00
mike cullerton
b03e596dcf One thing at a time; remove HSRNUMBER for now 2021-11-03 12:58:03 -04:00
mike cullerton
9c8ae36ba3 UVA IRB passes back Q_COMPLETE and HSRNUMBER 2021-11-03 12:40:43 -04:00
Dan Funk
c4f3a3ad0d
Merge pull request #413 from sartography/logging-script-513 
Logging script #513
 2021-11-01 15:41:38 -04:00
mike cullerton
b0c479420d New task_log model with schema, and migration 2021-10-27 12:19:09 -04:00
mike cullerton
7090a22a23 Remove content_html from the data we return from the email and get_email_data scripts 2021-10-26 16:28:50 -04:00
Dan
1c84bd9f1b Merge branch 'dev' into refactor/enums_as_key_value 2021-10-19 12:02:45 -04:00
Dan
5429e7da7d All enumerated lists used in web forms should contain a single value, not a dictionary of value/labels. 
Removing the spreadsheet.value.column and data.value.column so we just have value.column for both.
Improving the __str__ function in the ApiError class, to make debugging a little easier.
Adding a "validate_all" flask command, to help us track down any issues with current workflows in production (use this in concert with sync_with_testing)
Fixed logs of tests.
removed fact_runner.py, a very early and crufty bit of code.
 2021-10-19 10:13:43 -04:00
mike cullerton
dcb06f3753 Schema for returning email model 2021-10-13 11:42:01 -04:00
mike cullerton
699fc7daac Change column in email table from workflow_id to workflow_spec_id 2021-10-12 13:42:11 -04:00
mike cullerton
24932072dc Merge branch 'dev' into email-data-script-487 2021-10-07 12:30:13 -04:00
mike cullerton
10abf51f70 Added workflow_spec_id to WorkflowMetadata model, because the id is the workflow id, not the workflow_spec id. 
Then, we use workflow_spec_id in StudyService when looking for workflow status.
 2021-10-07 10:02:13 -04:00
mike cullerton
dab233a07a Add columns to email model for reporting 
Add Schema for email model
 2021-10-07 09:19:37 -04:00
alicia pritchett
7b6beae9c1 fixes frontend bailing out 
workflow id is workflow id
 2021-10-06 14:33:09 -04:00
mike cullerton
572ca1db6b Fixes for backend code after removing name column from workflow_spec and workflow_spec_category tables 2021-10-05 14:17:41 -04:00
mike cullerton
fcf538ca92 remove name column from workflow_spec and workflow_spec_category 2021-10-05 13:10:36 -04:00
Dan
c3995bfc3e Another try at getting the url correct. This paired with an additional setting on the server maybe. 2021-10-01 14:25:00 -04:00
Dan
5924ee48f4 One more try at getting the currect url. 2021-09-30 16:56:27 -04:00
Dan Funk
6b5a55df4c
Merge pull request #383 from sartography/feature/476_file_url 
URL for files
 2021-09-30 13:47:37 -04:00
Dan Funk
fbfb241c0b
Merge pull request #382 from sartography/feature/381_validate_field_types 
fixes #381 Assure that the field type provided is supported.  Catches errors suc…
 2021-09-30 13:46:40 -04:00
Dan
e002ffd363 Fixing a broken test. 2021-09-30 10:30:58 -04:00
alicia pritchett
d5d4496cd0 Admin flag on category + migration + updated test 2021-09-29 16:53:59 -04:00
Dan
8a4a53f028 Assure that the field type provided is supported. Catches errors such as adding a custom field type of 'text_area' rather than "textarea" 2021-09-29 14:05:45 -04:00